Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq638 111 1e-19 seq168 109 5e-19 seq646 107 2e-18 seq1 104 2e-17 seq219 93.3 4e-14 seq885 91.5 1e-13 seq786 82.4 7e-11 >seq638 Length=135235416 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 3886902 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 3886843 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||| ||||| ||| Sbjct 3886842 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTG 3886783 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || || || ||| ||||| ||||| || Sbjct 3886782 CCTGTTTCCGTCTGAGACTCAATGATGGC 3886754 >seq168 Length=201391403 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| |||||||| Sbjct 5653671 AAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAACCC 5653730 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | ||| ||| |||||||| | || || || Sbjct 5653731 TCGGATACGATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGGAATTCCTCCTGAT 5653790 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || || || |||||||| ||| ||||||| | | | ||| || || || Sbjct 5653791 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGTACTTTGTCTGACTA 5653849 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 5653850 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 5653891 >seq646 Length=133456746 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 124982252 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 124982193 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 124982192 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 124982134 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | |||| || ||||| |||||| ||||||| | | | || || || || | Sbjct 124982133 GCAGAGGTTAATCTTTGCTGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 124982075 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || ||||| || ||||| || |||| || | ||||||| ||| Sbjct 124982074 ACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 124982025 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || |||||| |||| || || || Sbjct 124983164 ATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGT 124983105 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || || || ||||||||| | || || ||||| Sbjct 124983104 GACACCATCGAGAATGTCAAGGCAAAG-ATCCAAGATAAGGAAGGCATCCCTCCTGACCA 124983046 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || ||||| |||||| ||||||| || || ||||| || Sbjct 124983045 GCAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGATTACAA 124982986 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || || || ||||| || Sbjct 124982985 CATCCAGAAAGAGTCTACCCTGCACCTGGTGCT 124982953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| |||| || || || Sbjct 124982480 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGT 124982421 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 124982420 GACACCATCGAGAACGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 124982362 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || || || || ||| ||||||| | | | || || || || | Sbjct 124982361 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 124982303 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || ||||| || || || || ||||| || Sbjct 124982302 ACATCCAGAAAGAGTCTACCCTGCACCTGGTGCT 124982269 >seq1 Length=228908639 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| |||||||| || || || || || || || |||||| |||| | ||||| Sbjct 172115946 CAAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAAC 172116005 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || || | | |||| || || | || ||| |||||||| | || || | Sbjct 172116006 CCTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTG 172116065 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 | |||||| | || || || |||||||| ||| ||||||| | | | ||| || || Sbjct 172116066 ATCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGTACTTTGTCTGAC 172116124 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || |||||||| || || ||||||||||| || | ||||| Sbjct 172116125 TACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 172116168 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/218 (71%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || Sbjct 197684220 TCAAA-ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTGGAG 197684162 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGC 31304 || |||| |||||| || || | |||| | ||| ||||||||| | | | Sbjct 197684161 CCCAGTGACACCATCGAAAATGTGAAG--GCCAATATCCTGGATAAGGAAGGCATCCTTC 197684104 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC 31363 ||||||||||| | || || || || |||| ||| | ||||| | || ||| | Sbjct 197684103 CCGACCAGCAGAGGCTCATCTTTGCAGGCATGCAGCTAGAAGA-TGGCTGCACTCTTTCT 197684045 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||| || ||||| ||||| || | ||||| Sbjct 197684044 GACTACAACATCCAGAAAGAGTCGACCCTGTACCTGGT 197684007 >seq219 Length=165317712 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 62366805 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 62366746 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || ||| || |||||| | || ||||||||| Sbjct 62366745 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 62366686 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 62366685 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 62366626 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || || ||||| || | ||||| || |||| Sbjct 62366625 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTA 62366577 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| || || || || ||||| || |||||| | || || || Sbjct 62367038 TCAAA-ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAG 62366980 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | || ||| ||||||||| | || ||| Sbjct 62366979 CCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCC 62366920 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 62366919 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 62366860 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| || || ||||| || | ||||| || |||| Sbjct 62366859 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTA 62366805 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || ||||| | || || || || Sbjct 62366577 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 62366518 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || || || |||||| | || ||||||||| Sbjct 62366517 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCCGACCAG 62366458 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 62366457 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 62366398 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| ||||| || || ||||| || | |||||||| || Sbjct 62366397 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGG 62366351 >seq885 Length=63231202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 13/219 (6%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||| | || || || ||||| ||||| |||||| || | |||||||| || Sbjct 35758838 ATGCAGATTTTCATGAAAACCCTTACAGGGAAAACCATCACCCTCAAGGTTGAACCCTCG 35758897 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| || || || ||| | ||| ||||| || | || || || | Sbjct 35758898 GATACCACAGAAAATGTAAAGACCAAGA-TCCAGGATAAGGACGGAATTCCTCCTGATCG 35758956 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | |||||||| |||||||| || ||||||| || || || || || Sbjct 35758957 GCAAAGACTAATATTTGCTGGCAAGCAACTGGAAGA-----TGTCT------GACTACAA 35759005 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || ||||||||||| || | ||||| Sbjct 35759006 CATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 35759044 >seq786 Length=95888799 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || | |||| || | |||||||| Sbjct 10327746 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACAACCACCCTCAAGGTTGAACCA 10327805 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | || | | |||| || || | || ||| |||||||| | || || || Sbjct 10327806 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 10327865 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | | || || |||||||| || ||||||| | ||| ||| || | || Sbjct 10327866 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGGCTA 10327924 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||||||||| || ||||||||| | || | |||||| | || ||| Sbjct 10327925 CAATATTCAAAAAGAGTCTACTCTTCATTTTGTGTTGAGACTGCGTGGTGGT 10327976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445539555051120