Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq931 257 2e-63 seq39 120 3e-22 seq377 111 1e-19 seq1 96.9 3e-15 seq638 87.8 2e-12 >seq931 Length=156331669 Score = 257 bits (284), Expect = 2e-63 Identities = 610/912 (67%), Gaps = 21/912 (2%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 |||||||| | | || | ||| | |||| | ||||| || | |||| | || || Sbjct 44829992 ATTCTCTTTTGGACTTAACACCACTCTCATCCTCTGATACTCGCCTACTCTCCTCTCAAA 44830051 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || |||||||| | ||||| |||| |||| ||||| ||| || | | ||| Sbjct 44830052 GAAGTTAGTCTTTC-----AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCC 44830106 Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487 ||| || || | |||| | || | | ||| ||||| || || || || || || Sbjct 44830107 GAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTG 44830166 Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547 ||||| | |||||||| || || || | ||| || | || | || | || || Sbjct 44830167 CTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTC 44830226 Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTT---CCTTAGATGGTGG 11604 | |||||| | ||| |||| || ||||| | | |||| ||| |||||| Sbjct 44830227 TTGTTCTATCTGAACAGCATTGATAATTATTTC---TCTCACTTTCTCCTCCGATGGTTT 44830283 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 44830284 GTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 44830343 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || |||||||| ||||| || | || |||||| ||||||||| || | ||| ||||| Sbjct 44830344 AATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATAT 44830403 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| |||||||||||||| || || || || || || || ||||| || ||| Sbjct 44830404 CGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACATGTTC 44830463 Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| ||||||||| || ||||| || || Sbjct 44830464 ACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGAC 44830523 Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| | ||| || || || | | |||| | ||||| | |||| | | Sbjct 44830524 ACAAGGCATCG-TTCAATGGCATTGAAGAGAAATTC--CCTTTCTTTGAGATCTTTGATG 44830580 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | | |||||||||||| ||||| || |||||||| || ||||| || Sbjct 44830581 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 44830640 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTAC-ATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| || || |||| | ||| || || | ||||| ||| | ||||| Sbjct 44830641 CCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCT-AAATCGCTCCACCAAATT 44830699 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||||| || |||||||| | |||||| || | || | ||| |||||| ||| | Sbjct 44830700 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCT 44830759 Query 12079 TTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAAC 12138 || || | | ||||| | | || || || | || || || || Sbjct 44830760 CTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGT 44830819 Query 12139 GGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGG 12198 |||||| || ||| | | | |||||||| | |||||||||||| |||| || || Sbjct 44830820 GGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGG 44830879 Query 12199 GAAAATAACGAA 12210 ||| || || || Sbjct 44830880 GAAGATGACAAA 44830891 Score = 141 bits (156), Expect = 9e-29 Identities = 314/463 (68%), Gaps = 20/463 (4%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077 Query 11750 ATTCCCTCCACAGCTGCAAATGC----TACTACTCTTTCTCCAT-----AT-ACCTTGTT 11799 | | ||| | ||||| || | | || | |||||||| || | ||||| Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATGTCTTTGTT 144506017 Query 11800 GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859 | | ||||| | ||||| | || ||||| || || || ||| ||||| || Sbjct 144506016 CCCA---ATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 144505961 Query 11860 AGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || | | | |||| | ||||| | |||||| ||| |||||| || || | | | Sbjct 144505960 GGCACTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATATGTGTCAATAAGGAGA 144505905 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||| ||||| |||| || ||||| ||||| ||||| || |||||||| || | Sbjct 144505904 TTATTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTT 144505845 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 |||| | ||| || || | |||| |||| | || || |||| || || |||||| Sbjct 144505844 TCTGTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCA 144505785 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTT 12080 | | ||| || || || || ||||| |||||| ||| ||| Sbjct 144505784 CATGCTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTT 144505742 >seq39 Length=107640188 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||||||||| | |||||||||| ||||||||| || Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| ||||| |||||||| || || ||||| || ||||| ||| Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 97368720 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 97368721 ACAACACGTTCACC 97368734 >seq377 Length=146757320 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 103162975 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 103163034 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| | Sbjct 103163035 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 103163094 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 103163095 CCACCACTCTTTCCCC 103163110 >seq1 Length=228908639 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| ||| || || || || | | |||||||||||| ||||| | |||||||| || Sbjct 140322482 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGC 140322541 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||| || |||||||||| || || |||| | ||| || || ||||| || Sbjct 140322542 AATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 140322601 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057 | | || || |||||||| || |||||||| | |||||| || || || Sbjct 140322602 CACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 140322649 >seq638 Length=135235416 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||| ||| Sbjct 3895939 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 3895880 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 3895879 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3895820 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 3895819 CTGTTTCTTATACCAT 3895804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468286373585840