Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq931 257 2e-63
seq39 120 3e-22
seq377 111 1e-19
seq1 96.9 3e-15
seq638 87.8 2e-12
>seq931
Length=156331669
Score = 257 bits (284), Expect = 2e-63
Identities = 610/912 (67%), Gaps = 21/912 (2%)
Strand=Plus/Plus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367
|||||||| | | || | ||| | |||| | ||||| || | |||| | || ||
Sbjct 44829992 ATTCTCTTTTGGACTTAACACCACTCTCATCCTCTGATACTCGCCTACTCTCCTCTCAAA 44830051
Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427
|| |||||||| | ||||| |||| |||| ||||| ||| || | | |||
Sbjct 44830052 GAAGTTAGTCTTTC-----AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCC 44830106
Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487
||| || || | |||| | || | | ||| ||||| || || || || || ||
Sbjct 44830107 GAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTG 44830166
Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547
||||| | |||||||| || || || | ||| || | || | || | || ||
Sbjct 44830167 CTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTC 44830226
Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTT---CCTTAGATGGTGG 11604
| |||||| | ||| |||| || ||||| | | |||| ||| ||||||
Sbjct 44830227 TTGTTCTATCTGAACAGCATTGATAATTATTTC---TCTCACTTTCTCCTCCGATGGTTT 44830283
Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664
|||| | ||||| ||||| || || ||||||||||| |||||||| || ||||| ||
Sbjct 44830284 GTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 44830343
Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724
|| |||||||| ||||| || | || |||||| ||||||||| || | ||| |||||
Sbjct 44830344 AATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATAT 44830403
Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784
| ||||| |||||||||||||| || || || || || || || ||||| || |||
Sbjct 44830404 CGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACATGTTC 44830463
Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841
||||| || ||| ||| ||||| ||||||||| || ||||| || ||
Sbjct 44830464 ACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGAC 44830523
Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899
|| ||| | ||| || || || | | |||| | ||||| | |||| | |
Sbjct 44830524 ACAAGGCATCG-TTCAATGGCATTGAAGAGAAATTC--CCTTTCTTTGAGATCTTTGATG 44830580
Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959
|| || || || | | |||||||||||| ||||| || |||||||| || ||||| ||
Sbjct 44830581 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 44830640
Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTAC-ATCCACATAAAATCTTTCCGCTAAATT 12018
||||||||||| || || |||| | ||| || || | ||||| ||| | |||||
Sbjct 44830641 CCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCT-AAATCGCTCCACCAAATT 44830699
Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078
|||||||| || |||||||| | |||||| || | || | ||| |||||| ||| |
Sbjct 44830700 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCT 44830759
Query 12079 TTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAAC 12138
|| || | | ||||| | | || || || | || || || ||
Sbjct 44830760 CTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGT 44830819
Query 12139 GGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGG 12198
|||||| || ||| | | | |||||||| | |||||||||||| |||| || ||
Sbjct 44830820 GGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGG 44830879
Query 12199 GAAAATAACGAA 12210
||| || || ||
Sbjct 44830880 GAAGATGACAAA 44830891
Score = 141 bits (156), Expect = 9e-29
Identities = 314/463 (68%), Gaps = 20/463 (4%)
Strand=Plus/Minus
Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689
|| ||||| | ||| |||||||| || || || || || |||||||| |||||||| |
Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137
Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749
|| ||||||| |||| |||| || | ||| ||||| ||||| ||||||||||||||
Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077
Query 11750 ATTCCCTCCACAGCTGCAAATGC----TACTACTCTTTCTCCAT-----AT-ACCTTGTT 11799
| | ||| | ||||| || | | || | |||||||| || | |||||
Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATGTCTTTGTT 144506017
Query 11800 GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859
| | ||||| | ||||| | || ||||| || || || ||| ||||| ||
Sbjct 144506016 CCCA---ATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 144505961
Query 11860 AGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917
|| | | | |||| | ||||| | |||||| ||| |||||| || || | | |
Sbjct 144505960 GGCACTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATATGTGTCAATAAGGAGA 144505905
Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977
||| ||||| |||| || ||||| ||||| ||||| || |||||||| || |
Sbjct 144505904 TTATTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTT 144505845
Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037
|||| | ||| || || | |||| |||| | || || |||| || || ||||||
Sbjct 144505844 TCTGTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCA 144505785
Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTT 12080
| | ||| || || || || ||||| |||||| ||| |||
Sbjct 144505784 CATGCTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTT 144505742
>seq39
Length=107640188
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || ||||||||||||||||| | |||||||||| ||||||||| ||
Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| ||||| |||||||| || || ||||| || ||||| |||
Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 97368720
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||| ||
Sbjct 97368721 ACAACACGTTCACC 97368734
>seq377
Length=146757320
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || |
Sbjct 103162975 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 103163034
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| |
Sbjct 103163035 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 103163094
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 103163095 CCACCACTCTTTCCCC 103163110
>seq1
Length=228908639
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||| ||| || || || || | | |||||||||||| ||||| | |||||||| ||
Sbjct 140322482 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGC 140322541
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009
||||| || |||||||||| || || |||| | ||| || || ||||| ||
Sbjct 140322542 AATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 140322601
Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057
| | || || |||||||| || |||||||| | |||||| || || ||
Sbjct 140322602 CACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 140322649
>seq638
Length=135235416
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| || || ||||| |||
Sbjct 3895939 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 3895880
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || || |||||||| || || || || |
Sbjct 3895879 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3895820
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 3895819 CTGTTTCTTATACCAT 3895804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468286373585840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |