Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq848 138 1e-27 seq168 111 1e-19 >seq848 Length=78004504 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| || || || |||||||||||||||||||| || | Sbjct 14422031 TCAGGCCCGTGATGTGTGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 14422090 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || |||||||||||||| | || |||||||||||||||||||||||||| | Sbjct 14422091 GCACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 14422150 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 14422151 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 14422194 >seq168 Length=201391403 Score = 111 bits (122), Expect = 1e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || | |||| || ||||| || ||||| || || ||||| | | Sbjct 95260020 TTTAAGGCATCATCCAAACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 95260079 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||| | | | ||| || ||||| ||||| ||||| Sbjct 95260080 TCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 95260139 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || ||| | || || | || | Sbjct 95260140 AACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCCTCTACTGAAGAAGTTGTG 95260199 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| |||| |||||| | | ||| || || || ||||| |||| ||||| Sbjct 95260200 GTCATTCTCTGGAAATACCTGAATTCATTCCTGAGTGGCGGCCTGGGCAGGTCCCCGTTC 95260259 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || || || || | | || || || ||||||||||| Sbjct 95260260 TTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 95260300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427563752387280