Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq931 127 1e-24 >seq931 Length=156331669 Score = 127 bits (140), Expect = 1e-24 Identities = 396/598 (66%), Gaps = 44/598 (7%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| |||||||| | || || || |||||| ||||||||||| || | || Sbjct 44830852 ATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGAC 44830793 Query 22405 GTACGCCATTGGACAGAAAAACTGA---CCGAGGCTGAGCGCAGGTTCATGTCTCACATA 22461 | || || ||| ||| |||| |||||| || | || || || || | Sbjct 44830792 ATTCGGCACTGG---GAACCCCTGAAGCCCGAGG---AGAGATATTTTATATCCCATGTT 44830739 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 |||| ||||||||| ||| |||||||| ||| || || | ||| || |||| Sbjct 44830738 CTGGTTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTT 44830682 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || ||| | | | ||| |||||||| | ||||||||| || || | || || Sbjct 44830681 AGCCAAATAGTTC----AGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCAT 44830626 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635 |||||| |||||| |||||||||||| || || ||| ||| ||| | | ||||| Sbjct 44830625 GGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACAC-TTAC-ATC-AAAGATCT 44830569 Query 22636 --AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 || ||| || | |||| || |||| ||||| ||||| || ||||| Sbjct 44830568 CAAAGAAAGGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAGAAGAAGGC 44830510 Query 22692 ACAGTGGGC--TGCACAATGGCTGAAT--GCCACACATAAGT---CTATCGCAACACGTC 22744 | | ||||| ||| |||| || | ||| | | | |||| | | || | Sbjct 44830509 AGATTGGGCCTTGC------GCTGGATTGGGGACAAAGAGGCTACCTATGGTGA-ACATG 44830457 Query 22745 TCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCT 22804 | | ||||| || || || |||||| || | |||||||| || ||||| | ||||||| Sbjct 44830456 TTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 44830397 Query 22805 GGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTG 22864 |||| |||||||| | ||||| || | |||||||||| || | |||||| | | Sbjct 44830396 GGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAG 44830337 Query 22865 ACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | || ||| |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 44830336 ATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCAAACACCTGGTACACAAACC 44830279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 22777 TTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTG 22836 |||||||| || ||||| ||||||||||| ||||||| || ||||| || | Sbjct 144506081 TTTTCTGGTTCTTTTGCACTGATATTCTGGCTCAAGAAACAAGGACTGATGCCTGGCCTC 144506140 Query 22837 GCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 | |||||||| || | |||||| |||| || ||| |||||||| |||||||||| Sbjct 144506141 ACATTTTCCAATGAACTTATTAGCAGTGATGAGGGTTTACACTGTTACTTTGCTTG 144506196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356056849244533