Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq646 113 4e-20
seq219 102 8e-17
seq1 89.7 5e-13
seq931 84.2 2e-11
>seq646
Length=133456746
Score = 113 bits (124), Expect = 4e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-T 139605
|| |||| || ||||| | || |||||||| || ||||| || || || |||| |
Sbjct 124982035 AAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 124982094
Query 139606 CGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTC 139665
| | ||||| |||||||| |||||| |||| | | ||||| || ||||| ||||||||
Sbjct 124982095 CCA-TCTTCCAGCTGTTTCCCAGCAAAGATTAACCTCTGCTGGTCAGGAGGGATGCCTTC 124982153
Query 139666 TTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725
||||| ||| ||| || | | || | ||||| ||||||||||||| | |||
Sbjct 124982154 CTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGT 124982213
Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| |||||||| |||| || || ||||| || |||||
Sbjct 124982214 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 124982252
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
||||||||||| || ||||| ||||| || |||| | ||||| |||||||| |||
Sbjct 124982968 GTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCCA 124983027
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || ||||| |||||||| || || ||| ||| ||
Sbjct 124983028 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTG 124983087
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||| | ||| | ||||| || |||| ||
Sbjct 124983088 ACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGAGTC 124983147
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 124983148 TTCACGAAGATCTGCAT 124983164
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
||||||||||| || ||||| || || || |||| || | ||||| ||||| || ||
Sbjct 124982284 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTTCC 124982342
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| ||
Sbjct 124982343 GGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTT 124982402
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | ||||| ||||||| ||||| | ||| | ||||| || |||| ||
Sbjct 124982403 GACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGT 124982462
Query 139747 TTTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 124982463 CTTCACGAAGATCTGCAT 124982480
>seq219
Length=165317712
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | || |||||||| || ||||| || || | ||||
Sbjct 62366363 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 62366422
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || || ||| |||| || | ||||| |||||||| |||||||||||
Sbjct 62366423 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 62366482
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | ||| | ||||| ||||||||||||| | || |
Sbjct 62366483 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 62366542
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||||||||| || || ||||| || ||||||
Sbjct 62366543 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 62366578
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| | ||||| || | ||| | || ||||| || || ||||| || ||
Sbjct 62366807 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366866
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| ||||| || || ||| |||| || | ||||| ||||| ||
Sbjct 62366867 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 62366926
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||| || || ||| || || | | ||| | ||||| |||||||||||
Sbjct 62366927 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 62366986
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| ||| | ||||||||||| | ||||| ||||| || |||||
Sbjct 62366987 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 62367033
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| | ||||| || | ||| | || ||||| || || ||||| || ||
Sbjct 62366579 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366638
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| ||||| || || ||| |||| || | ||||| ||||||||
Sbjct 62366639 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366698
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||||||||| || ||| || || | | ||| | ||||| ||||||||||
Sbjct 62366699 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 62366758
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | ||| | |||||||| |||| || || ||||| || ||||||
Sbjct 62366759 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 62366806
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || || ||| |||| || | ||||||||| | || |||||||||||
Sbjct 57062696 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGTGGGGGATGCCTTCTTTA 57062755
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | ||| | ||||| |||||||||| || | ||| |
Sbjct 57062756 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 57062815
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||||||||| || || ||||| || ||||||
Sbjct 57062816 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 57062851
>seq1
Length=228908639
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || | |||| ||||| ||||| | ||
Sbjct 197684019 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCTAGCTGCATGCCT 197684078
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| |||||| | |||||||| || || ||| || ||
Sbjct 197684079 GCAAAGATGAGCCTCTGCTGGTCGGGAAGGATGCCTTCCTTATCCAGGATATTGGCCTTC 197684138
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | ||| | ||||| ||||||||||||| | ||| | |||||||| |||| |||
Sbjct 197684139 ACATTTTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTC 197684198
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 197684199 TTCACGAAGATCTGCAT 197684215
>seq931
Length=156331669
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/203 (70%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| |||| ||| ||||||||||| | || || || | || | ||||| || ||
Sbjct 3273455 TGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 3273397
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| ||
Sbjct 3273396 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTAGATCTT 3273337
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|||| | ||| | | || | ||| || ||||||| ||| | ||||| || |
Sbjct 3273336 GGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCCT 3273277
Query 139741 CAACGTTTTTACGAATATTTGCA 139763
| ||||| ||||| || ||||
Sbjct 3273276 TAGGGTTTTCACGAAAATCTGCA 3273254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495811559231200
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