Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq646 113 4e-20 seq219 102 8e-17 seq1 89.7 5e-13 seq931 84.2 2e-11 >seq646 Length=133456746 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-T 139605 || |||| || ||||| | || |||||||| || ||||| || || || |||| | Sbjct 124982035 AAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 124982094 Query 139606 CGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTC 139665 | | ||||| |||||||| |||||| |||| | | ||||| || ||||| |||||||| Sbjct 124982095 CCA-TCTTCCAGCTGTTTCCCAGCAAAGATTAACCTCTGCTGGTCAGGAGGGATGCCTTC 124982153 Query 139666 TTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| ||| || | | || | ||||| ||||||||||||| | ||| Sbjct 124982154 CTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGT 124982213 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||||| |||| || || ||||| || ||||| Sbjct 124982214 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 124982252 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| ||||| || |||| | ||||| |||||||| ||| Sbjct 124982968 GTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCCA 124983027 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || ||||| |||||||| || || ||| ||| || Sbjct 124983028 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTG 124983087 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | ||||| || |||| || Sbjct 124983088 ACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGAGTC 124983147 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 124983148 TTCACGAAGATCTGCAT 124983164 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 ||||||||||| || ||||| || || || |||| || | ||||| ||||| || || Sbjct 124982284 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTTCC 124982342 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| || Sbjct 124982343 GGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTT 124982402 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| ||||||| ||||| | ||| | ||||| || |||| || Sbjct 124982403 GACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGT 124982462 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 124982463 CTTCACGAAGATCTGCAT 124982480 >seq219 Length=165317712 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 62366363 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 62366422 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| |||||||| ||||||||||| Sbjct 62366423 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 62366482 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||| | || | Sbjct 62366483 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 62366542 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 62366543 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 62366578 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 62366807 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366866 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| ||||| || Sbjct 62366867 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 62366926 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | ||| | ||||| ||||||||||| Sbjct 62366927 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 62366986 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||||||||| | ||||| ||||| || ||||| Sbjct 62366987 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 62367033 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 62366579 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366638 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| |||||||| Sbjct 62366639 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366698 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| || || | | ||| | ||||| |||||||||| Sbjct 62366699 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 62366758 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||| |||| || || ||||| || |||||| Sbjct 62366759 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 62366806 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||||||| | || ||||||||||| Sbjct 57062696 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGTGGGGGATGCCTTCTTTA 57062755 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| |||||||||| || | ||| | Sbjct 57062756 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 57062815 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 57062816 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 57062851 >seq1 Length=228908639 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || | |||| ||||| ||||| | || Sbjct 197684019 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCTAGCTGCATGCCT 197684078 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| |||||| | |||||||| || || ||| || || Sbjct 197684079 GCAAAGATGAGCCTCTGCTGGTCGGGAAGGATGCCTTCCTTATCCAGGATATTGGCCTTC 197684138 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||| | ||| | |||||||| |||| ||| Sbjct 197684139 ACATTTTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTC 197684198 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 197684199 TTCACGAAGATCTGCAT 197684215 >seq931 Length=156331669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||| ||| ||||||||||| | || || || | || | ||||| || || Sbjct 3273455 TGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 3273397 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 3273396 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTAGATCTT 3273337 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | | || | ||| || ||||||| ||| | ||||| || | Sbjct 3273336 GGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCCT 3273277 Query 139741 CAACGTTTTTACGAATATTTGCA 139763 | ||||| ||||| || |||| Sbjct 3273276 TAGGGTTTTCACGAAAATCTGCA 3273254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495811559231200