Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq931 385 7e-102 seq1 154 2e-32 seq638 114 2e-20 seq39 100 4e-16 seq860 89.7 7e-13 >seq931 Length=156331669 Score = 385 bits (426), Expect = 7e-102 Identities = 651/937 (69%), Gaps = 18/937 (2%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAG---ACATAACTCCCATTT 49669 |||| |||||| ||| || | |||| ||| |||| | || ||| |||| ||| Sbjct 44829964 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTCATCC 44830023 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || || || || | | || || || ||||| |||| | ||| ||||| | Sbjct 44830024 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44830078 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 || | || ||||| || | || ||| || |||| |||| ||| || | Sbjct 44830079 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44830138 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || ||||| || || ||| ||||| | |||||||| || || || | Sbjct 44830139 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44830198 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | ||| | || || ||||||||||| || || |||| | || || Sbjct 44830199 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44830258 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGA 49966 ||| || ||||| | | || ||| | | | | ||||| |||||||| || || | Sbjct 44830259 CTCTCAC--TTTCTCCTC-CGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAA 44830315 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 |||| ||||| | |||||| ||||| ||||| ||||| |||||||||||||| || |||| Sbjct 44830316 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 44830375 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | | || || || || ||||| ||||| || ||||| || |||||||||||||| |||| Sbjct 44830376 TCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTT 44830435 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACT 50143 ||||||| || ||||| |||| || ||||| | || |||| ||||| Sbjct 44830436 CTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGC 44830495 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 |||||||| |||||||| || ||||||||||||||| | |||||||| |||||| Sbjct 44830496 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAGAA 44830554 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | | |||| || |||||| | ||||| || || | |||||||||||||| |||| Sbjct 44830555 ATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44830614 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | |||||||| ||||| || || || || |||||||| | || || |||||||| ||| Sbjct 44830615 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44830674 Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383 | | |||||| || | ||||||||||| ||||| || ||||| |||||||| || Sbjct 44830675 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44830734 Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATAT 50443 ||| ||||| |||||||| | | || | ||| | || | ||| | || | Sbjct 44830735 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGT 44830794 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 | || || | || || || || ||||| || || ||||| ||||| |||||||| | Sbjct 44830795 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 44830854 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 |||||| ||||| || | ||| ||||| || ||||| Sbjct 44830855 GCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891 Score = 188 bits (208), Expect = 1e-42 Identities = 315/450 (70%), Gaps = 18/450 (4%) Strand=Plus/Minus Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 ||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 144506184 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144506125 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 || | || || ||||| ||||| ||||| || |||||||||||| | | ||| | Sbjct 144506124 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCGCC 144506065 Query 50092 GCGGCAAAGGC-------AACAAGTCTCTCTCCATA---ACTGGCGCTGTCATGTATCCA 50141 ||||||||| |||| || ||||||| | || | ||| ||||| Sbjct 144506064 AGGGCAAAGGCTGCATGCAACACGT---TCTCCATGGGTAATGTCTTTGTTCCCAATCCA 144506008 Query 50142 -CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 | || ||||| | |||||||| || ||||| ||||||||||| |||||| | |||| Sbjct 144506007 ACACAAGA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGCACTGAAGA 144505950 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 || | | |||| || |||||||| ||| || || || | ||| ||| ||||| | Sbjct 144505949 GAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAG 144505892 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320 ||| |||||||| || || || || || || ||||| || | || |||||||| | Sbjct 144505891 AATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTGTAATCTGAA 144505832 Query 50321 CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 ||||| | |||| |||| | || ||||||| | ||| || |||| ||||| || | Sbjct 144505831 CTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATGCTGCGAAGA 144505772 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTT 50410 | |||| | ||| |||||||| | ||| Sbjct 144505771 AAGCCAGAATATGGGATATAAAATATCTTT 144505742 >seq1 Length=228908639 Score = 154 bits (170), Expect = 2e-32 Identities = 239/336 (71%), Gaps = 13/336 (4%) Strand=Plus/Plus Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TG 50130 |||||||| |||| ||||| |||||||| |||| | || ||||| | || || Sbjct 140322339 AAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTTTG 140322398 Query 50131 TCAT--GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 || ||| | ||| | || |||| |||||||| |||||||| ||||| | Sbjct 140322399 TCCCCAGTA-CAACTCAAG-GCGCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAA 140322450 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 ||| || |||||| | | |||| || |||||| | ||||| || || | |||| Sbjct 140322451 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140322510 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 |||||||||| ||||| ||||||| ||||| || || || | |||||||| | || | Sbjct 140322511 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140322570 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | |||||||| |||||| | |||||| || | || |||||||| ||||| || |||| Sbjct 140322571 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 140322630 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 50404 | |||||||| || |||| ||| | |||||||| Sbjct 140322631 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140322666 >seq638 Length=135235416 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||| | Sbjct 3898777 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 3898718 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 3898717 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 3898658 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 3898657 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 3898607 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | ||| Sbjct 3884843 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 3884784 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 3884783 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 3884724 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 3884723 TCCAGGTAAATAGC 3884710 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 3895939 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 3895880 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 3895879 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3895820 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 3895819 CTGTTTCTTATACCATA 3895803 >seq39 Length=107640188 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 97370970 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 97371029 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 97371030 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97371089 >seq860 Length=57935654 Score = 89.7 bits (98), Expect = 7e-13 Identities = 179/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| ||||| Sbjct 51798142 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 51798085 Query 47761 TCCAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATT 47819 || | |||||||| || | || |||| | | || ||||| || |||| ||| || | || Sbjct 51798084 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 51798025 Query 47820 T-ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAAT 47878 | || | ||| | ||| | | ||||| || | || || | ||||| ||||||| Sbjct 51798024 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 51797965 Query 47879 CTTCGTCTATTACACCACCTCCTATAT---CAATGCCTTTTAGTGACAGTCCAGACCTAG 47935 |||| ||| | |||||| |||||| || ||| | |||| | || |||||||| | Sbjct 51797964 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 51797905 Query 47936 GAGCTATTCTACCATAGCA 47954 |||||| ||| ||||| || Sbjct 51797904 GAGCTACTCT-CCATAACA 51797887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717903281986040