Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq931 385 7e-102
seq1 154 2e-32
seq638 114 2e-20
seq39 100 4e-16
seq860 89.7 7e-13
>seq931
Length=156331669
Score = 385 bits (426), Expect = 7e-102
Identities = 651/937 (69%), Gaps = 18/937 (2%)
Strand=Plus/Plus
Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAG---ACATAACTCCCATTT 49669
|||| |||||| ||| || | |||| ||| |||| | || ||| |||| |||
Sbjct 44829964 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTCATCC 44830023
Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729
| || || || || || | | || || || ||||| |||| | ||| ||||| |
Sbjct 44830024 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44830078
Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789
|| | || ||||| || | || ||| || |||| |||| ||| || |
Sbjct 44830079 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44830138
Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849
||| || || ||||| || || ||| ||||| | |||||||| || || || |
Sbjct 44830139 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44830198
Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909
| || || | ||| | || || ||||||||||| || || |||| | || ||
Sbjct 44830199 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44830258
Query 49910 ATCTAACGGTTTCTTCACTCGGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGA 49966
||| || ||||| | | || ||| | | | | ||||| |||||||| || || |
Sbjct 44830259 CTCTCAC--TTTCTCCTC-CGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAA 44830315
Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026
|||| ||||| | |||||| ||||| ||||| ||||| |||||||||||||| || ||||
Sbjct 44830316 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 44830375
Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086
| | || || || || ||||| ||||| || ||||| || |||||||||||||| ||||
Sbjct 44830376 TCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTT 44830435
Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACT 50143
||||||| || ||||| |||| || ||||| | || |||| |||||
Sbjct 44830436 CTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGC 44830495
Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203
|||||||| |||||||| || ||||||||||||||| | |||||||| ||||||
Sbjct 44830496 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAGAA 44830554
Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263
| | |||| || |||||| | ||||| || || | |||||||||||||| ||||
Sbjct 44830555 ATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44830614
Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323
| |||||||| ||||| || || || || |||||||| | || || |||||||| |||
Sbjct 44830615 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44830674
Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383
| | |||||| || | ||||||||||| ||||| || ||||| |||||||| ||
Sbjct 44830675 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44830734
Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATAT 50443
||| ||||| |||||||| | | || | ||| | || | ||| | || |
Sbjct 44830735 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGT 44830794
Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503
| || || | || || || || ||||| || || ||||| ||||| |||||||| |
Sbjct 44830795 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 44830854
Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540
|||||| ||||| || | ||| ||||| || |||||
Sbjct 44830855 GCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891
Score = 188 bits (208), Expect = 1e-42
Identities = 315/450 (70%), Gaps = 18/450 (4%)
Strand=Plus/Minus
Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031
||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| ||
Sbjct 144506184 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144506125
Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091
|| | || || ||||| ||||| ||||| || |||||||||||| | | ||| |
Sbjct 144506124 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCGCC 144506065
Query 50092 GCGGCAAAGGC-------AACAAGTCTCTCTCCATA---ACTGGCGCTGTCATGTATCCA 50141
||||||||| |||| || ||||||| | || | ||| |||||
Sbjct 144506064 AGGGCAAAGGCTGCATGCAACACGT---TCTCCATGGGTAATGTCTTTGTTCCCAATCCA 144506008
Query 50142 -CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200
| || ||||| | |||||||| || ||||| ||||||||||| |||||| | ||||
Sbjct 144506007 ACACAAGA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGCACTGAAGA 144505950
Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260
|| | | |||| || |||||||| ||| || || || | ||| ||| ||||| |
Sbjct 144505949 GAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAG 144505892
Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320
||| |||||||| || || || || || || ||||| || | || |||||||| |
Sbjct 144505891 AATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTGTAATCTGAA 144505832
Query 50321 CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380
||||| | |||| |||| | || ||||||| | ||| || |||| ||||| || |
Sbjct 144505831 CTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATGCTGCGAAGA 144505772
Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTT 50410
| |||| | ||| |||||||| | |||
Sbjct 144505771 AAGCCAGAATATGGGATATAAAATATCTTT 144505742
>seq1
Length=228908639
Score = 154 bits (170), Expect = 2e-32
Identities = 239/336 (71%), Gaps = 13/336 (4%)
Strand=Plus/Plus
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TG 50130
|||||||| |||| ||||| |||||||| |||| | || ||||| | || ||
Sbjct 140322339 AAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTTTG 140322398
Query 50131 TCAT--GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188
|| ||| | ||| | || |||| |||||||| |||||||| ||||| |
Sbjct 140322399 TCCCCAGTA-CAACTCAAG-GCGCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAA 140322450
Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248
||| || |||||| | | |||| || |||||| | ||||| || || | ||||
Sbjct 140322451 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140322510
Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308
|||||||||| ||||| ||||||| ||||| || || || | |||||||| | || |
Sbjct 140322511 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140322570
Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368
| |||||||| |||||| | |||||| || | || |||||||| ||||| || ||||
Sbjct 140322571 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 140322630
Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 50404
| |||||||| || |||| ||| | ||||||||
Sbjct 140322631 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140322666
>seq638
Length=135235416
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| |||||||| |||||||| || |||||| ||| | || || || || ||||| |
Sbjct 3898777 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 3898718
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
||| |||||| |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 3898717 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 3898658
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 3898657 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 3898607
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| |||||||||||||| | || |||||||||| | |||
Sbjct 3884843 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 3884784
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| ||||| | | || || ||||||| ||
Sbjct 3884783 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 3884724
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 3884723 TCCAGGTAAATAGC 3884710
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 3895939 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 3895880
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||| |||| || |||||||| || || || ||||| || || | | ||||
Sbjct 3895879 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3895820
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 3895819 CTGTTTCTTATACCATA 3895803
>seq39
Length=107640188
Score = 100 bits (110), Expect = 4e-16
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||| | ||||| || || | ||||||||||||||| ||||| |||||||| |||||
Sbjct 97370970 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 97371029
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339
|| || || || |||||||| | || || |||||||| |||||| | |||||| ||
Sbjct 97371030 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97371089
>seq860
Length=57935654
Score = 89.7 bits (98), Expect = 7e-13
Identities = 179/259 (69%), Gaps = 10/259 (4%)
Strand=Plus/Minus
Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760
||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||
Sbjct 51798142 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 51798085
Query 47761 TCCAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATT 47819
|| | |||||||| || | || |||| | | || ||||| || |||| ||| || | ||
Sbjct 51798084 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 51798025
Query 47820 T-ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAAT 47878
| || | ||| | ||| | | ||||| || | || || | ||||| |||||||
Sbjct 51798024 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 51797965
Query 47879 CTTCGTCTATTACACCACCTCCTATAT---CAATGCCTTTTAGTGACAGTCCAGACCTAG 47935
|||| ||| | |||||| |||||| || ||| | |||| | || |||||||| |
Sbjct 51797964 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 51797905
Query 47936 GAGCTATTCTACCATAGCA 47954
|||||| ||| ||||| ||
Sbjct 51797904 GAGCTACTCT-CCATAACA 51797887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717903281986040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |