Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq931 282 4e-71 seq39 123 2e-23 seq1 120 3e-22 >seq931 Length=156331669 Score = 282 bits (312), Expect = 4e-71 Identities = 498/718 (69%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | ||||| | |||||||||||||| ||| |||||| ||||| ||| Sbjct 44830026 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTCC 44830080 Query 13644 ATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||| |||||||| | | | | ||| ||| | | |||| ||||| | | | Sbjct 44830081 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAAG 44830139 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| || || | ||||||||| ||||| ||||| | |||||||| || || || || Sbjct 44830140 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44830199 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | ||| | ||||||| |||||| ||||| | | ||||| || Sbjct 44830200 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT---TGATAATTAT 44830256 Query 13823 TGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | | |||| | || || | | || ||||| || || || || ||||| Sbjct 44830257 TTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAA 44830316 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||||| || | ||||||||||| ||||||||||| || ||||| || | || ||||| Sbjct 44830317 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 44830376 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 | ||||||||| || | ||| ||||| | ||||| || || |||||||| || || || Sbjct 44830377 CGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 44830436 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 |||||||| || |||| | |||| ||| | | || | ||||| | ||||| Sbjct 44830437 TACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCG 44830496 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || || || | | || ||| | |||||| ||||| || | | | Sbjct 44830497 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAA 44830555 Query 14120 TTCCTTCTCTTT-AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178 |||| | ||||| || ||| ||||| || |||||||| | |||||||||||||| | Sbjct 44830556 TTCCCTTTCTTTGAGATCTT-TGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44830614 Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTT 14238 ||||||||||||| || || || || ||||| || || | ||||| | || ||| Sbjct 44830615 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44830674 Query 14239 CCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 | ||||| || ||||||||||||| ||||| |||||||| |||||||| || Sbjct 44830675 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44830732 Score = 129 bits (142), Expect = 6e-25 Identities = 302/445 (68%), Gaps = 17/445 (4%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| |||| |||| || | ||| ||||| ||||| || || |||||||| Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077 Query 13992 ATTCCCTCAACTGCAGCAAACGCT--AT--TAATCGTTCTCCAAACG--ATGCTTTTTTG 14045 | | || | ||||| ||| || | ||||||||| | ||| | |||| Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATG--TCTTTG 144506019 Query 14046 TTCGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 ||| ||||| | || |||| | | || || || | | | ||| |||||||| Sbjct 144506018 TTCCCAATCCA-ACACAAGACCCAACCTGCCTTCTTCTTGA-CACAGGCATCGTTTCAAT 144505961 Query 14105 AGCATTAAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGC 14163 ||| | || | | ||||| | ||||| || ||| || ||||| |||||||| | Sbjct 144505960 GGCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGAT 144505904 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 ||| |||||||| | ||||||||| ||||| || || || ||||| ||||| | || Sbjct 144505903 TATTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTT 144505844 Query 14224 CCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | | || ||||| |||| ||| | || ||||||| | ||| ||||||| Sbjct 144505843 CTGTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCAC 144505784 Query 14284 TAGCTGCAAAAAATGCC--AATATG 14306 ||||| || || ||| |||||| Sbjct 144505783 ATGCTGCGAAGAAAGCCAGAATATG 144505759 >seq39 Length=107640188 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 97368719 CTACAACACGTTCACC 97368734 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 97366489 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 97366547 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 97366548 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 97366607 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 97366608 CATAAAGTCAAATGGGTT 97366625 >seq1 Length=228908639 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14096 TGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14155 ||||||||| | || || | | ||||| | ||||| | | | ||||| || ||||| Sbjct 140322443 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAAT 140322502 Query 14156 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 ||| | |||||||||||||| ||| |||||||||| || || || || |||| || || Sbjct 140322503 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 140322562 Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275 | ||||| | || ||||| | ||||| || |||| |||||||| ||||| Sbjct 140322563 GCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 140322622 Query 14276 ACCATCACTAGCTGCAAAAAATGCCA 14301 |||||||| |||||||| || |||| Sbjct 140322623 GCCATCACTTGCTGCAAAGAAAGCCA 140322648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479483872417400