Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq931 242 4e-59
seq39 120 3e-22
seq1 114 1e-20
>seq931
Length=156331669
Score = 242 bits (268), Expect = 4e-59
Identities = 489/716 (68%), Gaps = 12/716 (2%)
Strand=Plus/Plus
Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431
||||| || | ||||| | ||||| |||||||| ||| |||||| ||||| |||
Sbjct 44830026 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTCC 44830080
Query 13432 ATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490
|||| || ||||| | | | | ||| ||| | | |||| ||||| | | |
Sbjct 44830081 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAAG 44830139
Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550
||| || || | ||||||||| ||||| ||||| | |||||||| || || || ||
Sbjct 44830140 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44830199
Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609
||||| | | || | ||||||| |||||| ||||| | | | || ||
Sbjct 44830200 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44830259
Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669
||| | | | || | || || | | || ||||| || || || || |||||||
Sbjct 44830260 TCTCACTT-TCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44830318
Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729
|||| || | ||||||||||| ||||||||||| || ||||| || | || ||||||
Sbjct 44830319 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44830378
Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789
||||||||| || | ||| ||||| | || || || || |||||||| || || || |
Sbjct 44830379 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44830438
Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849
||||||| || |||| | |||| ||| | | || | ||||| |||||
Sbjct 44830439 CTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44830498
Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909
||||| || | || || || | | || ||| | ||| || |||||||| | | ||
Sbjct 44830499 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAATT 44830557
Query 13910 CCTTCTCTTT-AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968
|| | ||||| || ||| ||||| || |||||||| | |||||||||||||| |||
Sbjct 44830558 CCCTTTCTTTGAGATCTT-TGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGT 44830616
Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028
|||||||| || || || || || ||||| ||||| | ||||||| || ||
Sbjct 44830617 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATT 44830676
Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084
| ||||| || |||| |||||||| || || |||||||| |||||||| ||
Sbjct 44830677 TGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44830732
Score = 114 bits (126), Expect = 1e-20
Identities = 299/445 (67%), Gaps = 17/445 (4%)
Strand=Plus/Minus
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|| ||||| | ||| || | |||||||| || ||||||||||| || |||||||| |
Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779
|| ||||||| |||| |||| || | ||| ||||| || || || || ||||||||
Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077
Query 13780 ATTCCCTCAACTGCAGCAAACGCT--AT--TAGTCGTTCTCCAAACG--ATGCTTTTTTG 13833
| | || | ||||| ||| || | ||||||||| | ||| | ||||
Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATG--TCTTTG 144506019
Query 13834 TTTGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGAT 13892
|| ||||| | || |||| | | || || || | | | ||| ||||| ||
Sbjct 144506018 TTCCCAATCCA-ACACAAGACCCAACCTGCCTTCTTCTTGA-CACAGGCATCGTTTCAAT 144505961
Query 13893 TGCATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGC 13951
||| |||| | | |||| | ||||| || ||| || ||||| |||||||| |
Sbjct 144505960 GGCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGAT 144505904
Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011
||| |||||||| | ||||||||||||||| || || || ||||| || || | ||
Sbjct 144505903 TATTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTT 144505844
Query 14012 CTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071
||| || || || |||| ||| | |||||||||| | || |||||||
Sbjct 144505843 CTGTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCAC 144505784
Query 14072 TAGCTGCAAAAAATGCC--AATATG 14094
||||| || || ||| ||||||
Sbjct 144505783 ATGCTGCGAAGAAAGCCAGAATATG 144505759
>seq39
Length=107640188
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || ||||||||||| || || || ||||||||||| |
Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||| ||
Sbjct 97368719 CTACAACACGTTCACC 97368734
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 97366489 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 97366547
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 97366548 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 97366607
Query 13431 CATAAAATCGAATGGATT 13448
|||||| || ||||| ||
Sbjct 97366608 CATAAAGTCAAATGGGTT 97366625
Score = 82.4 bits (90), Expect = 7e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989
||||| || |||||||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 97370977 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 97371036
Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014
|| ||||| ||||| | |||||||
Sbjct 97371037 AAGCCATAGAAACAGCGGGCTTCTG 97371061
>seq1
Length=228908639
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 13884 TGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943
|||||| || | ||||| | | |||| | ||||| | | | ||||| || |||||
Sbjct 140322443 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAAT 140322502
Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003
||| | |||||||||||||| ||| ||||||| || || || || || |||| |||||
Sbjct 140322503 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 140322562
Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063
| ||||||| || || || | ||||| || ||||||||||||| || ||
Sbjct 140322563 GCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 140322622
Query 14064 ACCATCACTAGCTGCAAAAAATGCCA 14089
|||||||| |||||||| || ||||
Sbjct 140322623 GCCATCACTTGCTGCAAAGAAAGCCA 140322648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478345252142040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |