Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq931 367 2e-96
seq1 140 4e-28
seq638 111 2e-19
seq39 95.1 2e-14
seq860 84.2 3e-11
>seq931
Length=156331669
Score = 367 bits (406), Expect = 2e-96
Identities = 647/938 (69%), Gaps = 20/938 (2%)
Strand=Plus/Plus
Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAG---ACATAACTCCCATTT 41774
|||| |||||| ||| ||| | |||| ||| |||| | || ||| |||| |||
Sbjct 44829964 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTCATCC 44830023
Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834
| || || || || || | | || || || |||||||||| | ||| ||||| |
Sbjct 44830024 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44830078
Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894
|| | || ||||| || | || ||| || |||| |||| ||| || |
Sbjct 44830079 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44830138
Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954
||| ||||| | || || || ||| ||||| | |||||||| || || || |
Sbjct 44830139 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44830198
Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014
| || || | ||| | || || ||||||||||| || || || | | || ||
Sbjct 44830199 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44830258
Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074
||| ||| | || || ||| | | | ||||| |||||||| || || ||||
Sbjct 44830259 CTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44830318
Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134
| ||||| | |||||||||||| ||||| | ||| |||||||||||||| || |||||
Sbjct 44830319 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44830378
Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194
| || || || || ||||| ||||| || ||||| || |||||||||||||| |||||||
Sbjct 44830379 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44830438
Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTT 42251
|||| || ||||| | || || ||||| | | | |||| |||||
Sbjct 44830439 CTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44830498
Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311
|||||||| |||||||| || ||||||||||||||| | |||||||| |||||| | |
Sbjct 44830499 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAGAAATT 44830557
Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371
|||| || |||||| | || || || || | |||||||||||||| ||||| |
Sbjct 44830558 CCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44830617
Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431
||||||| ||||| || || || || |||||||| | ||| || |||| ||| ||| |
Sbjct 44830618 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44830677
Query 42432 TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491
| |||||| || | |||||||| || ||||| || ||||| |||||||| || |||
Sbjct 44830678 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44830737
Query 42492 ATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG----ATA 42547
||||| |||||||||| | || || || || | |||| || || ||
Sbjct 44830738 GAACATGGGATATAAAATATCTCTCCTCGGGC-TTCAGGGGTTCC---CAGTGCCGAATG 44830793
Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607
|| || || | || || || || ||||| || || || || ||||| ||||||||
Sbjct 44830794 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44830853
Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
| |||||||||||| || | || ||||| || |||||
Sbjct 44830854 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891
Score = 192 bits (212), Expect = 8e-44
Identities = 386/561 (69%), Gaps = 26/561 (5%)
Strand=Plus/Minus
Query 42077 CAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 42136
||||| | ||||||||| || ||||| | ||| |||||||| ||||| || ||||| ||
Sbjct 144506184 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144506125
Query 42137 CCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACT 42196
|| | || || ||||| ||||| ||||| || |||||||||||| | | ||| |
Sbjct 144506124 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCGCC 144506065
Query 42197 GCCGCAAAGGCA--AT--AAGTCTCTCTCCATAACCGGCACTGTCAT-GT-----ATCCA 42246
|||||||| || || | ||||||| || | |||| | || |||||
Sbjct 144506064 AGGGCAAAGGCTGCATGCAACACGTTCTCCATG---GGTAATGTCTTTGTTCCCAATCCA 144506008
Query 42247 -CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305
| || ||||| | |||||||| || ||||| ||||||||||| |||||| | ||||
Sbjct 144506007 ACACAAGA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGCACTGAAGA 144505950
Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365
|| | | |||| || |||||||| |||||| || || | ||| ||| ||||| |
Sbjct 144505949 GAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAG 144505892
Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425
||| |||||||| || || || || || || ||||| || || || |||| ||| |
Sbjct 144505891 AATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTGTAATCTGAA 144505832
Query 42426 CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485
||||| | |||| |||| | || ||||| | | ||| || |||| ||||| || |
Sbjct 144505831 CTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATGCTGCGAAGA 144505772
Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG- 42544
| |||| | ||| |||||||||| ||| || || || | |||| || ||
Sbjct 144505771 AAGCCAGAATATGGGATATAAAATATCTTTACTCAGG-CTTCAGGGCTTCC---CAGTGC 144505716
Query 42545 ---ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601
|| || || || | || || || | || |||| || || | ||| | || ||
Sbjct 144505715 CAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTT 144505656
Query 42602 TACATATTCCAGATATCATGA 42622
||||| ||||| |||||||||
Sbjct 144505655 TACATTTTCCAAATATCATGA 144505635
>seq1
Length=228908639
Score = 140 bits (154), Expect = 4e-28
Identities = 236/336 (70%), Gaps = 13/336 (4%)
Strand=Plus/Plus
Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTG 42235
|||||||| |||| ||||| |||||||| | || | || ||||| | | | ||
Sbjct 140322339 AAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTTTG 140322398
Query 42236 TCAT--GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293
|| ||| | ||| | || |||| |||||||| |||||||| ||||| |
Sbjct 140322399 TCCCCAGTA-CAACTCAAG-GCGCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAA 140322450
Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353
||| || |||||| | | |||| || |||||| | || || || || | ||||
Sbjct 140322451 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140322510
Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413
|||||||||| ||||| ||||||| ||||| || || || | |||||||| | ||| |
Sbjct 140322511 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140322570
Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473
| |||| ||| |||||| | |||||| || | || ||||| || ||||| || ||||
Sbjct 140322571 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 140322630
Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509
| |||||||| || |||| ||| | ||||||||
Sbjct 140322631 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140322666
>seq638
Length=135235416
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || |||||||| || |||||| |||| |||| || || ||||| || |
Sbjct 3898777 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 3898718
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| || || |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 3898717 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 3898658
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 3898657 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 3898607
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||||||||| |||||||| |||||||||||||| | || |||||||||| | |||
Sbjct 3884843 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 3884784
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| ||||| | | || || ||||||| ||
Sbjct 3884783 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 3884724
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 3884723 TCCAGGTAAATAGC 3884710
Score = 105 bits (116), Expect = 9e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 3895939 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 3895880
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||| |||| || |||||||| || || || ||||| || || | | || |
Sbjct 3895879 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3895820
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 3895819 CTGTTTCTTATACCAT 3895804
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || |||||||| || | | | ||| || ||||| || || || | || ||||
Sbjct 3890754 CATAGGTTTCGTATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCACCAT 3890695
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||| ||||| || |||| |||||| || || ||||| | || ||||| || |
Sbjct 3890694 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGT 3890635
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| | | || ||||| || ||||| | ||||| || ||||| || || || | || |
Sbjct 3890634 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 3890575
Query 71561 TCTTATTAGA 71570
||||| ||
Sbjct 3890574 GTTTATTTGA 3890565
>seq39
Length=107640188
Score = 95.1 bits (104), Expect = 2e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||| | || || || || | ||||||||||||||| ||||| |||||||| |||||
Sbjct 97370970 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 97371029
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| || || || |||||||| | ||| || |||| ||| |||||| | |||||| ||
Sbjct 97371030 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97371089
Score = 87.8 bits (96), Expect = 2e-12
Identities = 103/139 (74%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774
|||| |||||| |||| || | |||| ||| ||| | || ||||| ||||||||
Sbjct 97366487 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 97366546
Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834
| || || || || || | || || || || |||||||||||||||| ||| ||||| |
Sbjct 97366547 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 97366606
Query 41835 CCATGAAATCAAACGGATT 41853
|||| || ||||| || ||
Sbjct 97366607 CCATAAAGTCAAATGGGTT 97366625
>seq860
Length=57935654
Score = 84.2 bits (92), Expect = 3e-11
Identities = 178/259 (69%), Gaps = 10/259 (4%)
Strand=Plus/Minus
Query 39798 TCCAGTTGATCCAAATCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 39855
||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| ||||||
Sbjct 51798142 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 51798085
Query 39856 TCCAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATT 39914
|| | |||||||| || | || |||| | | || ||||| || |||| ||| || | ||
Sbjct 51798084 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 51798025
Query 39915 TACATTGAAAGTACATTTTCCATTA-TTAATAAGAATGACTCCTATGTTTCCCCTATAAT 39973
| || ||| | ||| || | |||| || | || || | ||||| |||||||
Sbjct 51798024 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 51797965
Query 39974 CTTCGTCTATTACACCGCCTCCTATATCAATA---CCTTTTAGGGACAGACCAGACCTAG 40030
|||| ||| | ||||| |||||| ||||| | |||| | || |||||||| |
Sbjct 51797964 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 51797905
Query 40031 GAGCTATTCTACCATAGCA 40049
|||||| ||| ||||| ||
Sbjct 51797904 GAGCTACTCT-CCATAACA 51797887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670797665650360
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