Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq168 104 1e-17 seq786 89.7 3e-13 >seq168 Length=201391403 Score = 104 bits (114), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| |||||||| ||||||||| | || || Sbjct 5653886 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 5653827 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| ||| || | | ||||| || | || || ||||| || || Sbjct 5653826 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 5653767 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| ||||| || ||||| ||| || || || || Sbjct 5653766 CTGTATCTTGGCCT---TTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 5653710 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||||||||| ||||| |||||||| ||||| || Sbjct 5653709 GGTCTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 5653671 >seq786 Length=95888799 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| ||||| | || ||||||||||| |||||||| |||||||| | | || Sbjct 10327961 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATCCATC 10327902 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | |||||| || | || || ||||| || || Sbjct 10327901 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 10327842 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| ||||| || |||| ||| | || || | Sbjct 10327841 CTGGATCTTGGCC---TTTACATTTTCTATCGTATCCAATGGTTCAACCTTGAGGGTGGT 10327785 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || |||||||| ||||| |||||||| ||||| || Sbjct 10327784 TGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 10327746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318619433612478