Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq24626 219 1e-52 >seq24626 Length=2868 Score = 219 bits (242), Expect = 1e-52 Identities = 634/971 (65%), Gaps = 16/971 (2%) Strand=Plus/Plus Query 22416 CGTTGGTTAGCGGCTTGTTCGAACACAGTTCGCATACGAACTTGTCCTTTACCTACTTCG 22475 ||||| | | ||| ||||| || ||||||| ||| || | || |||||||| ||||| Sbjct 12 CGTTGATCAATGGCCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCAACTTCA 71 Query 22476 TCAGTTACTCGAACAACTTCTTTAAGGACCATGCTGCCCCAAGCATCACGTATATGGTCA 22535 || ||| | || ||||| | ||| || |||||||| ||||| ||||| || || || || Sbjct 72 TCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATTTGCTCC 131 Query 22536 TCCATCCACTGAGATTGGCTACCAACAGCATTACTGAATTTAGTAATCAATACCCTAACA 22595 ||||||||| | || || ||| | ||| ||| |||| |||| ||| | | ||| Sbjct 132 TCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATACGTACA 191 Query 22596 TCAGGCTCAAACCCGCCGAGGTCCAC--TCCAGCCATAAGATCACGCAACATAGTGAAAA 22653 |||||||| ||||| || || || || | | |||||||| | |||| ||||| Sbjct 192 TCAGGCTCGAACCCTTTAAGATCAACGTTCTTG--AGCAGATCACGAAGCATATCGAAAA 249 Query 22654 ATTGCAATGTGCTGACATAGTCATAAAGTTCAGCTGGAGTTGGTACAACAATGACATCAG 22713 | |||| || | | |||||| | | ||||| || || || |||| | ||||||| Sbjct 250 ACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACATCAG 309 Query 22714 CGGCACAAACCACATTTATTGTGCCTATGCCCAAGTTAGGTGCACTGTCTAAAACAACTA 22773 | ||||| || ||||| || ||||| || |||| |||||| || ||||| | ||| | | Sbjct 310 CAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATGA 369 Query 22774 CGTCATAGCTGTCCCATACGGACTCGATTGCAGCACGTAGCATCATGTGCGGTGCTACAG 22833 | |||||| | || | || || || || ||||||| ||| || | | Sbjct 370 CATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGGTGG 429 Query 22834 GGAGCTTTTCGGCATCA----TGCAAAGGATATAATTCAGACTCAATTCGATGGATGGCC 22889 | || || | ||||| ||| | ||| |||| ||||| || || | ||| Sbjct 430 GCAGTTTACCTTCATCAAATTTGCCCA----TTAACTCAGTTTCAATACGGTGCAGAGCC 485 Query 22890 AGACAGGATGGGATTATGTCCAGATTTGGCCAACATGTTGGTTTGATGGCGTACATAGCA 22949 |||||||| || || ||||| || ||||| || || || || || || || | || Sbjct 486 AGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGACA 545 Query 22950 TCATCACGTTCACCTAAGTAATAAGGGAGTAGAGTTTCGTCTTCGTGGATATGCAAATCA 23009 || || ||| || | || |||| || ||||| || ||| | || ||||| | ||| Sbjct 546 TCGTCCTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGATCT 605 Query 23010 GGTACATACCCATGATAAAGGCTGGCGGTAGCTTGCGGATCTGTAGCATCAATCAATAGT 23069 ||||| | || ||||| | ||| || | || || || || | || | | | Sbjct 606 GGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCAAA 665 Query 23070 ACGCGTAAGCCCTGCAATGCTAACCATTGAGCTGTATGCACTGAGGTACT--TGTTTTGT 23127 || |||| |||| || || | ||||| ||| || || ||| ||||||| Sbjct 666 ACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAAC--AGAAACTGAGGTTTTGT 723 Query 23128 ATGCGCCACCTTTATGTGCCGCTATAGCCAATACTACTGGGTCTTGCCCATCAGGTCGTT 23187 | |||| |||||||| || || | | | || ||| | | |||| ||| Sbjct 724 AAACGCCGCCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTC 783 Query 23188 TCCAGCGTGTACCAAAATGATCCCGAAGGTCGTTAATTTGTTGAATCGTATATCCCGCTC 23247 | | || |||||||| ||| || | | |||||||||| ||| ||||| || | | Sbjct 784 GCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACAC 843 Query 23248 TTTGTGGCACTCTGCCACGTGTAACCATATCCGCAGGTGGCAATTTTCCTGAGTCCTCGC 23307 ||| || | || || | ||||||||| | || | | |||| | |||| Sbjct 844 GTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGG 903 Query 23308 CATTGCGGATGGTCTGAGGGGTTACACCAACTAATTCTGCAGCTTCAGTAATACCCCATC 23367 ||| | ||| | ||||| | || |||||||| || || |||||| || | ||| | Sbjct 904 CATCTCTGATAGCCTGAGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAGC 963 Query 23368 GACGAGTGATT 23378 | || || ||| Sbjct 964 GCCGGGTTATT 974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148091571519582