Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq931 266 3e-66 seq1 102 7e-17 seq377 96.9 3e-15 seq39 82.4 7e-11 >seq931 Length=156331669 Score = 266 bits (294), Expect = 3e-66 Identities = 582/865 (67%), Gaps = 10/865 (1%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| ||||| | ||||| ||||| || |||| | |||||||| ||| Sbjct 44830026 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTCC 44830080 Query 12923 ATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 |||| || || || | | | | | | || | | |||| | ||| || | | Sbjct 44830081 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCC-AGTTCCAGCATAAG 44830139 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || |||||||| ||||| || ||||||| | || ||||| || || | || Sbjct 44830140 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44830199 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| || || || | || | || |||||| | ||| || | ||||| ||| || Sbjct 44830200 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44830259 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 ||| | | | ||| |||| | | || || || ||||||| || |||||||| Sbjct 44830260 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44830319 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| || || |||||||| || || || || || ||||| || || || ||||| | Sbjct 44830320 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44830379 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||||||| || | ||| ||||| | ||||| ||||| ||||| || || ||||| || Sbjct 44830380 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44830439 Query 13282 TGCTGCAAACGCTATCAACCT-TTCACCATACGTACTATTTTTACTCTCTATCCACTTTC 13340 ||| || || |||| |||| | ||||||||| ||| | ||| | | ||||| Sbjct 44830440 TGCAGCGAAGGCTA-CAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44830498 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 |||||| | ||| || | || || || ||| ||| || || || || | | | | Sbjct 44830499 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCAT-CGTTCAATGGCATTGAAGAGAAATT 44830557 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 |||| || ||| || ||||| || || | | ||||||||||| ||||| | Sbjct 44830558 CCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44830617 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 | |||||||| || |||||||| ||||| ||||| | || |||| | ||||||| Sbjct 44830618 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44830677 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | ||||| || | || ||||| || ||||| || ||||| || ||||| ||| | | Sbjct 44830678 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44830737 Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTT 13640 | | || ||||| | | | || | || | ||| | ||| || | Sbjct 44830738 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGTCCT 44830797 Query 13641 TTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCC 13700 | || | || |||||||| |||||| || ||||| | ||||||||||||||| || Sbjct 44830798 TGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCC 44830857 Query 13701 ATATATCCTTATAAACAATGGGAAA 13725 | ||||| | || | ||||| || Sbjct 44830858 AGATATCATGGTACTCGATGGGGAA 44830882 >seq1 Length=228908639 Score = 102 bits (112), Expect = 7e-17 Identities = 114/152 (75%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 13434 TCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489 |||||||| ||||||||||| ||||| | |||||||| || |||||||| |||| Sbjct 140322498 TCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAG 140322557 Query 13490 AAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTA 13549 ||||| | || |||| | ||||||||| | ||||| || | |||||||| || Sbjct 140322558 AAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTT 140322617 Query 13550 ACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 ||||| || ||||| || ||||| ||||| || Sbjct 140322618 ACTATGCCATCACTTGCTGCAAAGAAAGCCAG 140322649 >seq377 Length=146757320 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 103162975 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 103163034 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || ||||| | Sbjct 103163035 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 103163094 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 103163095 CCACCACTCTTTCCCC 103163110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 103151143 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103151202 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 103151203 ATAAAATCAAAAGGATTTT 103151221 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 103176272 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103176213 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 103176212 ATAAAATCAAAAGGATTTT 103176194 >seq39 Length=107640188 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 97370977 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 97371035 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 97371036 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 97371074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430768561482822