Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq931 266 3e-66
seq1 102 7e-17
seq377 96.9 3e-15
seq39 82.4 7e-11
>seq931
Length=156331669
Score = 266 bits (294), Expect = 3e-66
Identities = 582/865 (67%), Gaps = 10/865 (1%)
Strand=Plus/Plus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| |||| ||||| | ||||| ||||| || |||| | |||||||| |||
Sbjct 44830026 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTCC 44830080
Query 12923 ATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981
|||| || || || | | | | | | || | | |||| | ||| || | |
Sbjct 44830081 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCC-AGTTCCAGCATAAG 44830139
Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041
|||||| || |||||||| ||||| || ||||||| | || ||||| || || | ||
Sbjct 44830140 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44830199
Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101
||||||| || || || | || | || |||||| | ||| || | ||||| ||| ||
Sbjct 44830200 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44830259
Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161
||| | | | ||| |||| | | || || || ||||||| || ||||||||
Sbjct 44830260 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44830319
Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221
|||||| || || |||||||| || || || || || ||||| || || || ||||| |
Sbjct 44830320 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44830379
Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281
|||||||| || | ||| ||||| | ||||| ||||| ||||| || || ||||| ||
Sbjct 44830380 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44830439
Query 13282 TGCTGCAAACGCTATCAACCT-TTCACCATACGTACTATTTTTACTCTCTATCCACTTTC 13340
||| || || |||| |||| | ||||||||| ||| | ||| | | |||||
Sbjct 44830440 TGCAGCGAAGGCTA-CAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44830498
Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400
|||||| | ||| || | || || || ||| ||| || || || || | | | |
Sbjct 44830499 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCAT-CGTTCAATGGCATTGAAGAGAAATT 44830557
Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460
|||| || ||| || ||||| || || | | ||||||||||| ||||| |
Sbjct 44830558 CCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44830617
Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520
| |||||||| || |||||||| ||||| ||||| | || |||| | |||||||
Sbjct 44830618 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44830677
Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580
| ||||| || | || ||||| || ||||| || ||||| || ||||| ||| | |
Sbjct 44830678 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44830737
Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTT 13640
| | || ||||| | | | || | || | ||| | ||| || |
Sbjct 44830738 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGTCCT 44830797
Query 13641 TTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCC 13700
| || | || |||||||| |||||| || ||||| | ||||||||||||||| ||
Sbjct 44830798 TGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCC 44830857
Query 13701 ATATATCCTTATAAACAATGGGAAA 13725
| ||||| | || | ||||| ||
Sbjct 44830858 AGATATCATGGTACTCGATGGGGAA 44830882
>seq1
Length=228908639
Score = 102 bits (112), Expect = 7e-17
Identities = 114/152 (75%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 13434 TCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489
|||||||| ||||||||||| ||||| | |||||||| || |||||||| ||||
Sbjct 140322498 TCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAG 140322557
Query 13490 AAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTA 13549
||||| | || |||| | ||||||||| | ||||| || | |||||||| ||
Sbjct 140322558 AAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTT 140322617
Query 13550 ACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581
||||| || ||||| || ||||| ||||| ||
Sbjct 140322618 ACTATGCCATCACTTGCTGCAAAGAAAGCCAG 140322649
>seq377
Length=146757320
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| || |
Sbjct 103162975 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 103163034
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || || || || || | |||||| || || ||||| |
Sbjct 103163035 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 103163094
Query 13293 CTATCAACCTTTCACC 13308
| | || ||||| ||
Sbjct 103163095 CCACCACTCTTTCCCC 103163110
Score = 93.3 bits (102), Expect = 4e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct 103151143 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103151202
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| ||||||||||
Sbjct 103151203 ATAAAATCAAAAGGATTTT 103151221
Score = 93.3 bits (102), Expect = 4e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct 103176272 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103176213
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| ||||||||||
Sbjct 103176212 ATAAAATCAAAAGGATTTT 103176194
>seq39
Length=107640188
Score = 82.4 bits (90), Expect = 7e-11
Identities = 79/99 (80%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
|| ||||| || || || ||| ||||||||||| ||||| || |||||||| || |||||
Sbjct 97370977 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 97371035
Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
||| ||||| ||||| | || |||| | |||||||||
Sbjct 97371036 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 97371074
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430768561482822
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |