Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 >seq1 Length=228908639 Score = 98.7 bits (108), Expect = 9e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 186547701 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 186547642 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || || | || |||||||| | ||| || ||||| || || || || Sbjct 186547641 CCCCAAGCTGAGAACCAAGACCCAGACATCAAGGCGCATGTGAACTCCCTCGGGGAGAAT 186547582 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | || || ||||| Sbjct 186547581 CTGAAGACCCTCAGGCTGAGGCTACGGCGCTG 186547550 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 186545359 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 186545300 Query 129164 GAC 129166 ||| Sbjct 186545299 GAC 186545297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447522545418320