Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq24626 354 3e-93 >seq24626 Length=2868 Score = 354 bits (392), Expect = 3e-93 Identities = 703/1036 (68%), Gaps = 10/1036 (1%) Strand=Plus/Plus Query 27559 GAGCGCTGATAAGCAGCCTGCTCAAATACCGTACGCATTTTTATTTGGCCCTTTCCTACT 27618 ||||| |||| | ||||| ||||| || || | ||| || || || || || ||| Sbjct 9 GAGCGTTGATCAATGGCCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCAACT 68 Query 27619 TCATCTGTCACCCTGACAACTTGACGCAGAACCATCGACCCCCACGTATTTCTTATCTGC 27678 ||||| || | | ||||| | |||||||| ||||| | || | || ||| Sbjct 69 TCATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATTTGC 128 Query 27679 TCTTCCATCCAGCGCGACTGATTACCAGTAGTCAGGCTGTATTTGGTTAGCAGCAGTCGT 27738 || |||||||| | |||||| ||| || | |||||||||||| |||| | ||| Sbjct 129 TCCTCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATACGT 188 Query 27739 ACCACCGGCTCGAAACCGCCTAAATCAACGGTTTTTAGTAGGTCCAGAAGCATGGTGAAG 27798 || | |||||||| || | ||||||| | || || || || ||||||| ||| Sbjct 189 ACATCAGGCTCGAACCCTTTAAGATCAACGTTCTTGAGCAGATCACGAAGCATATCGAAA 248 Query 27799 AACTGCAGAACGGATGAATAATCAAATAGCTCTGCAGGGGTAGCTACGACAATAATATCG 27858 |||||||| |||| | || ||||| | ||| ||||| || | || | | | ||| Sbjct 249 AACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACATCA 308 Query 27859 GCAGCACAAACAACATTAATCGTCCCTGTTCCGAGGTTAGGAGCGCTATCAATAACGATA 27918 |||||||| || ||||||||||| || | || |||||||| ||||| |||||||| || Sbjct 309 GCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATG 368 Query 27919 ATGTCATAGTTATCCCATACGGATTCTATAGCAGCCCGTAGCATCAGGTGAGG--CGGAT 27976 | ||||||| || || | ||| || || || ||||||||||| || ||| | Sbjct 369 ACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGG-T 427 Query 27977 GAGGTAGTTTTCCTTGGGCGTGGTATT---GCATCAGGTCCGTTTCGATACGGTGAAGCG 28033 | || ||||| |||| | | ||| ||| | || ||||| |||||||| || | Sbjct 428 G-GGCAGTTTACCTT---CATCAAATTTGCCCATTAACTCAGTTTCAATACGGTGCAGAG 483 Query 28034 CCAAGCAGCTGGGGATAATGTCCAGACCTGGCCAGCAGGTCGGCTTTATAGCGTATTCCG 28093 ||| ||| || |||||||| || || |||||||| || |||||||| || || Sbjct 484 CCAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGA 543 Query 28094 CATTATCACGCTCACCAAGGTAAAACGGGAGCAAAGTATCATCGGCGTGAATGTGCAAAT 28153 ||| || || ||||| || || || || | ||| || || || ||||| || | || Sbjct 544 CATCGTCCTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGAT 603 Query 28154 CAGGCACATAGCCATGATACATAGAGGCGGTTCCCTGCGGATCATTACCTTCAATGAGTA 28213 | || || | || |||||||| ||||| |||||||| || || |||||||| | ||| | Sbjct 604 CTGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCA 663 Query 28214 GAACTCGGTGACCCTGTAAGGCTAACCATTGAGCTTCATGTACTGCAGATGAGGTTTTAT 28273 ||| || | |||| | || | ||||| ||| || | | ||||||||| | Sbjct 664 AAACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAACAGAAACTGAGGTTTTGT 723 Query 28274 AAACGCCACCTTTGTGTGACATAACAGCTAAAACGGCTGGATTTTTATCGGCTGGCCGTT 28333 ||||||| ||||| || | ||| | | || | |||| | || | | ||| Sbjct 724 AAACGCCGCCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTC 783 Query 28334 GATTAGGATTACCGAAAATGTTCCGCATATGGCTAATTTGGTCGATGGTATAGCCAGCAC 28393 | | |||| || | | |||||||| ||||||| || || ||||| ||| ||| Sbjct 784 GCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACAC 843 Query 28394 GACGTTCGACGCGGCCACGCAATTCAAAATCAGGTGGCGGTAACCGCCCATTCTTCTCAG 28453 | | || || || || || | ||| | ||| || |||||| ||||| ||||| | Sbjct 844 GTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGG 903 Query 28454 CATCTCTAATCGCTTGCGGTGAAACACCGATTAAATCAGCAACCTCGGTTATCCCCCAGC 28513 ||||||| || || || | ||||| || | |||||| || | || ||| | ||||| Sbjct 904 CATCTCTGATAGCCTGAGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAGC 963 Query 28514 GACGAGTAATCTTACGTGCTTCAGGGCTATCATCACCAAATTGCGCTATGGCAATGGCTT 28573 | || || || || | ||||| ||||| |||||| ||| || || ||||| || || | Sbjct 964 GCCGGGTTATTTTCCTCGCTTCCGGGCTGTCATCATTAAACTGTGCAATGGCGATAGCCT 1023 Query 28574 GCGTCATCTCTTGTCC 28589 |||||| || || || Sbjct 1024 TCGTCATTTCATGACC 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164921831110866