Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 183 4e-41
seq728 132 7e-26
seq389 87.8 3e-12
>seq1
Length=228908639
Score = 183 bits (202), Expect = 4e-41
Identities = 178/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| || || |||| |||||| ||||| || |||| || |||||||| |||
Sbjct 165981838 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 165981897
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||||||||||| |||||||| || || |||||||| |||||||||||||| |||||
Sbjct 165981898 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 165981957
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | || | || || || |||| ||||| |||||||| |
Sbjct 165981958 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 165982017
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
|||| ||||||||| | ||| |||||||| || || ||||| ||||
Sbjct 165982018 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 165982066
Score = 159 bits (176), Expect = 5e-34
Identities = 229/323 (71%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 8654 TTGAGGAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTA 8713
|||| |||||| || ||||| | ||| | | || ||||| || || ||||| |
Sbjct 165979795 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 165979854
Query 8714 CAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAG 8773
|||| |||||||| || | ||| | |||| ||| ||| ||||| ||||| || ||
Sbjct 165979855 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 165979914
Query 8774 GTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAA 8833
||||| || |||||||| | || || || || || || |||| || ||||| | |||
Sbjct 165979915 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 165979974
Query 8834 AACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8893
|| || || || | || | ||| ||||||| |||||||| | || || ||||||||
Sbjct 165979975 AATGGTGCTCCAACTTCCACCATGGTCTCACCAAAGATGGCATCTGGCCGAGGCTTTTCT 165980034
Query 8894 ACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCG 8953
|||| | | | |||| ||||||||| |||||||| || || || || | ||
Sbjct 165980035 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 165980094
Query 8954 GCAGCGATTTCCTTTTCTCCTGT 8976
|||| |||||||||||||||||
Sbjct 165980095 GCAGACATTTCCTTTTCTCCTGT 165980117
Score = 116 bits (128), Expect = 5e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||| || || ||||| || || |||||| ||| ||| | ||
Sbjct 165982993 TCTTACCCCATGGCCCAGCCCATTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 165983052
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| |||||||| || ||| |||| || |||||||| | ||| | ||||||||||||
Sbjct 165983053 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 165983112
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
|| |||| | || | || || ||||||||||| | | ||| || || |
Sbjct 165983113 AGGGATGAACTTTCTTCTTAGGAGTAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 165983172
Query 10208 ttttttACCTGGTGAACGAGAA 10229
|||||||||| || |||||
Sbjct 165983173 CTTTTTACCTGAAAAATGAGAA 165983194
Score = 109 bits (120), Expect = 8e-19
Identities = 118/154 (77%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 10287 TCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGC 10345
||||||||||| |||||| ||||| || || || | ||| || ||||| || || |
Sbjct 165983606 TCACCTTTGACACCCAAG-GGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTAGT 165983664
Query 10346 GTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGAT 10405
||||||||||| || ||||| |||||||||||| ||| | ||||| || ||||| |
Sbjct 165983665 ATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGT 165983724
Query 10406 GGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| || ||||||||||||| ||||| |||||
Sbjct 165983725 TGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 165983758
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| | ||||| ||||| || | ||||||||| || || |
Sbjct 165981244 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 165981303
Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439
| | ||| || |||||||| | || ||| || ||| || || | || ||| |
Sbjct 165981304 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTATTTCTGGTCATGAATTT 165981361
Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499
||| | || |||| || | |||||||||||| | ||||||| || | | ||||
Sbjct 165981362 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAATTCAGCAGCAATAC 165981421
Query 9500 GATTTTGGTACTGGAA 9515
||||||||||||||||
Sbjct 165981422 GATTTTGGTACTGGAA 165981437
>seq728
Length=90977943
Score = 132 bits (146), Expect = 7e-26
Identities = 171/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||||||||| ||| ||||| || ||||| || ||||| || |||||||| |||| |
Sbjct 33098133 TCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 33098192
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
| |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || |
Sbjct 33098193 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 33098252
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || ||||| | ||| ||| || |||||| | | | ||| | ||| |||||||
Sbjct 33098253 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCAGGGTAGAACTCCA 33098312
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| || |||||||| || | || | || || || || ||||| ||||||
Sbjct 33098313 ACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 33098368
>seq389
Length=121655618
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/141 (74%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083
|| || |||||||| |||| | || |||||| | || || || |||| | |||
Sbjct 105713105 GTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 105713048
Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143
| || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||
Sbjct 105713047 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 105712988
Query 10144 GATCGGGAGTGAAGGTCCTCC 10164
| || || |||| ||||||
Sbjct 105712987 GGTCAGGTATGAACTTCCTCC 105712967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708164240585840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |