Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 seq728 132 7e-26 seq389 87.8 3e-12 >seq1 Length=228908639 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||| ||||| || |||| || |||||||| ||| Sbjct 165981838 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 165981897 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 165981898 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 165981957 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | || || || |||| ||||| |||||||| | Sbjct 165981958 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 165982017 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 165982018 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 165982066 Score = 159 bits (176), Expect = 5e-34 Identities = 229/323 (71%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 8654 TTGAGGAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTA 8713 |||| |||||| || ||||| | ||| | | || ||||| || || ||||| | Sbjct 165979795 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 165979854 Query 8714 CAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAG 8773 |||| |||||||| || | ||| | |||| ||| ||| ||||| ||||| || || Sbjct 165979855 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 165979914 Query 8774 GTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAA 8833 ||||| || |||||||| | || || || || || || |||| || ||||| | ||| Sbjct 165979915 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 165979974 Query 8834 AACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8893 || || || || | || | ||| ||||||| |||||||| | || || |||||||| Sbjct 165979975 AATGGTGCTCCAACTTCCACCATGGTCTCACCAAAGATGGCATCTGGCCGAGGCTTTTCT 165980034 Query 8894 ACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCG 8953 |||| | | | |||| ||||||||| |||||||| || || || || | || Sbjct 165980035 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 165980094 Query 8954 GCAGCGATTTCCTTTTCTCCTGT 8976 |||| ||||||||||||||||| Sbjct 165980095 GCAGACATTTCCTTTTCTCCTGT 165980117 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| || || ||||| || || |||||| ||| ||| | || Sbjct 165982993 TCTTACCCCATGGCCCAGCCCATTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 165983052 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || |||||||| | ||| | |||||||||||| Sbjct 165983053 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 165983112 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | || || ||||||||||| | | ||| || || | Sbjct 165983113 AGGGATGAACTTTCTTCTTAGGAGTAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 165983172 Query 10208 ttttttACCTGGTGAACGAGAA 10229 |||||||||| || ||||| Sbjct 165983173 CTTTTTACCTGAAAAATGAGAA 165983194 Score = 109 bits (120), Expect = 8e-19 Identities = 118/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 10287 TCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGC 10345 ||||||||||| |||||| ||||| || || || | ||| || ||||| || || | Sbjct 165983606 TCACCTTTGACACCCAAG-GGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTAGT 165983664 Query 10346 GTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGAT 10405 ||||||||||| || ||||| |||||||||||| ||| | ||||| || ||||| | Sbjct 165983665 ATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGT 165983724 Query 10406 GGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 165983725 TGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 165983758 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 165981244 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 165981303 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||| || |||||||| | || ||| || ||| || || | || ||| | Sbjct 165981304 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTATTTCTGGTCATGAATTT 165981361 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| || | |||||||||||| | ||||||| || | | |||| Sbjct 165981362 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAATTCAGCAGCAATAC 165981421 Query 9500 GATTTTGGTACTGGAA 9515 |||||||||||||||| Sbjct 165981422 GATTTTGGTACTGGAA 165981437 >seq728 Length=90977943 Score = 132 bits (146), Expect = 7e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||||| ||| ||||| || ||||| || ||||| || |||||||| |||| | Sbjct 33098133 TCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 33098192 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 33098193 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 33098252 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | ||| | ||| ||||||| Sbjct 33098253 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCAGGGTAGAACTCCA 33098312 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || |||||||| || | || | || || || || ||||| |||||| Sbjct 33098313 ACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 33098368 >seq389 Length=121655618 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || |||||||| |||| | || |||||| | || || || |||| | ||| Sbjct 105713105 GTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 105713048 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 105713047 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 105712988 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | || || |||| |||||| Sbjct 105712987 GGTCAGGTATGAACTTCCTCC 105712967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708164240585840