Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq235 174 2e-39 seq27780 132 8e-27 seq1 127 3e-25 seq646 125 1e-24 >seq235 Length=173266796 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | | || ||||||||||| || ||||| ||||||||||| Sbjct 26880861 CGCTAAGCGTCATCGCAAGGTTTTGCGCGATAACATCCAGGGCATCACTAAGCCAGCTAT 26880802 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || |||||||| || || |||||||| | ||||| | ||||||| |||| Sbjct 26880801 CCGGCGCCTTGCTCGTCGCGGCGGTGTCAAGCGAATTTCTGGCCTTATCTATGAGGAGAC 26880742 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| ||||| | ||||| ||| ||| || | ||| ||| || || || || Sbjct 26880741 TCGCGGTGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGACGCTGTCACTTACACAGA 26880682 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| || || | |||||| | ||||| || |||| || || || Sbjct 26880681 GCACGCCAAACGCAAGACCGTGACAGCAATGGATGTGGTCTACGCGCTGAAGCGACAGGG 26880622 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 26880621 GCGCACTCTTTACGGCTTCGG 26880601 Score = 152 bits (168), Expect = 8e-33 Identities = 196/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 26641439 GCCAAGCGCCACCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 26641497 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || || ||||| ||||||| || |||| || |||| Sbjct 26641498 CCGGCGTCTGGCCCGGCGTGGCGGTGTGAAGCGGATCTCTGGTCTGATCTACGAGGAGAC 26641557 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | || | ||| ||| |||| ||| ||| || |||||| || Sbjct 26641558 TCGCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 26641617 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 26641618 GCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 26641677 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | ||||||| ||||| ||||| Sbjct 26641678 ACGCACCCTTTATGGCTTTGGCGGTTAA 26641705 Score = 150 bits (166), Expect = 3e-32 Identities = 196/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | | || ||||| |||||||| ||||||||||| || || Sbjct 26646924 GCCAAGCGTCACCGAAAAGTGTTGCGGGATAATATCCAAGGCATCACCAAGCCGGCCATT 26646865 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||| | |||||||| || ||||| |||| || ||| | ||||| |||| | Sbjct 26646864 CGGCGCCTTGCTAGGCGTGGTGGGGTTAAGCGAATCTCCGGTTTGATTTATGAGGAGACT 26646805 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | || || ||| ||| |||| || || | ||| || ||| Sbjct 26646804 CGTGGCGTTCTCAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 26646745 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||||||||| |||||||| | || || || | || |||||||| Sbjct 26646744 CACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTCAAGCGTCAAGGA 26646685 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || || || ||||||||| Sbjct 26646684 CGCACCCTGTACGGCTTCGGCGGTTAATCTT 26646654 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | || || ||||||||||| || || || || |||||||| Sbjct 26725114 GCTAAGCGCCATCGTAAGGTGCTCCGGGATAACATCCAGGGCATTACAAAACCAGCTATT 26725173 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || ||||| |||||||| | || || | ||||||| |||| | Sbjct 26725174 CGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTTATCTATGAGGAGACT 26725233 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||| | ||| |||||| | || || || |||||| ||| Sbjct 26725234 CGAGGTGTGCTTAAGGTTTTCTTAGAGAACGTTATTCGAGACGCCGTCACCTATACGGAG 26725293 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || |||||||| |||||||| | || || || | |||||||| || Sbjct 26725294 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATACGCCCTAAAACGTCAGGGG 26725353 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 26725354 CGCACTCTGTATGGCTTTGG 26725373 Score = 147 bits (162), Expect = 3e-31 Identities = 196/270 (73%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| || || || || |||||||||||||| || || |||||||| |||| Sbjct 26815652 CGCTAAGCGTCACCGTAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCTGCTA 26815710 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || |||||||| || || |||||||| | ||||| | |||| || |||| Sbjct 26815711 TCCGGCGCCTTGCTCGTCGCGGGGGTGTCAAGCGCATTTCTGGTCTCATCTACGAGGAGA 26815770 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| ||||| | || || | | ||| || | ||| ||| | || || | Sbjct 26815771 CTCGCGGGGTTCTGAAGGTGTTTCTGGAAAACGTGATTCGTGACGCTGTGACTTACACGG 26815830 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| || || | |||||| | ||||| || |||| || || | Sbjct 26815831 AGCACGCCAAACGCAAGACAGTGACAGCGATGGATGTGGTCTACGCGCTGAAGCGACAGG 26815890 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | || | |||| || || || | |||| Sbjct 26815891 GACGCACTCTTTACGGCTTCGGCGGCTAAT 26815920 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || || || ||||| || ||||||||||| || || Sbjct 28413760 CGCTAAGCGCCACCGTAAAGTACTGCGCGACAATATCCAGGGTATCACCAAGCCGGCCAT 28413701 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| |||| || | |||| || |||| Sbjct 28413700 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 28413641 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||||| ||| ||| |||| || || | |||||| || Sbjct 28413640 TCGCGGGGTGCTTAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTATACAGA 28413581 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || ||||| |||||| |||||||| | ||||| || | || || || || Sbjct 28413580 GCACGCTAAGCGCAAGACGGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 28413521 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 28413520 CCGCACCCTCTACGGTTTCGG 28413500 Score = 131 bits (144), Expect = 3e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || |||||||||||||| || Sbjct 27708237 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCAGCCATT 27708296 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 27708297 CGGCGTCTTGCTCGCCGCGGCGGTGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGACC 27708356 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || | ||| || ||| Sbjct 27708357 CGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 27708416 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||| Sbjct 27708417 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 27708476 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 27708477 CGCACCCTCTATGGCTTCGG 27708496 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | ||| || || ||||| || || ||||||||||| || || Sbjct 28453295 CGCTAAGCGCCACCGCAAAGTTCTGCGCGACAACATTCAGGGCATCACCAAGCCCGCCAT 28453236 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || || ||||| |||| || | | || || |||| Sbjct 28453235 CCGACGCCTGGCACGGCGTGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAGAC 28453176 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | || | || | ||| || |||| ||||| | ||| || || Sbjct 28453175 ACGCGGAGTTCTTAAAGTGTTTTTGGAGAATGTAATCCGCGATGCAGTTACCTACACGGA 28453116 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| ||||| ||||||| | || || || | || || || || Sbjct 28453115 GCACGCCAAACGCAAGACAGTCACAGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 28453056 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | ||||| ||||| Sbjct 28453055 CCGCACCCTCTATGGCTTTGG 28453035 >seq27780 Length=10000 Score = 132 bits (146), Expect = 8e-27 Identities = 188/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || || || |||||||||||||||||||| || | Sbjct 1350 CGCCAAGCGTCACCGTA-AGGTATTGCGTGACAATATCCAAGGAATCACCAAGCCCGCCA 1292 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || ||||||||| | ||||| | | ||||| || | Sbjct 1291 TCCGCCGCCTGGCTCGCCGGGGCGGCGTCAAGCGTATTTCTGGCCTCATTTATGAGGAAA 1232 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || |||| | ||||| | | || |||| |||||| || ||| || | Sbjct 1231 CTCGCGGAGTGCTGAAAGTTTTCCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 1172 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| ||||||| | || || || | || || || | Sbjct 1171 AGCACGCCAAACGCAAGACAGTCACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 1112 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 1111 GACGCACTCTGTATGGCTTCGG 1090 >seq1 Length=228908639 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| |||| ||||| || || ||||||||||| || | Sbjct 128812094 CGCTAAGCGCCACCGCA-AGGTCTTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 128812152 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 128812153 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 128812212 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| || || | || || || ||| |||| Sbjct 128812213 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGGGACGCAGTCACCTACACCG 128812272 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 128812273 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 128812332 Query 16671 GCCG 16674 | || Sbjct 128812333 GGCG 128812336 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| |||| ||||| || || ||||||||||| || | Sbjct 128840403 CGCTAAGCGCCACCGCA-AGGTCTTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 128840345 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 128840344 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 128840285 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| || || | || || || ||| |||| Sbjct 128840284 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGGGACGCAGTCACCTACACCG 128840225 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 128840224 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 128840165 Query 16671 GCCG 16674 | || Sbjct 128840164 GGCG 128840161 >seq646 Length=133456746 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| || || ||||| || || || ||||| || || ||||| Sbjct 14677483 CTGCGGGACAACATCCAAGGCATTACAAAGCCGGCGATTCGCCGTCTCGCCCGACGTGGG 14677424 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | ||||| | |||| || |||| || | || | || ||||| Sbjct 14677423 GGCGTCAAGCGCATTTCTGGTCTCATCTACGAGGAGACCCGGGGAGTCCTCAAAGTCTTC 14677364 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || | || || |||||||| || || ||||| ||| Sbjct 14677363 CTGGAGAACGTGATCCGTGACGCGGTGACTTACACGGAGCACGCCAAGCGCAAGACCGTC 14677304 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | || || || ||||||| || || || | |||||||||| || Sbjct 14677303 ACGGCCATGGATGTGGTGTACGCGCTGAAACGCCAGGGTCGCACCCTTTATGGTTTCGG 14677245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79037977647723