Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq235 174 2e-39
seq27780 132 8e-27
seq1 127 3e-25
seq646 125 1e-24
>seq235
Length=173266796
Score = 174 bits (192), Expect = 2e-39
Identities = 195/261 (75%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||||| | | || ||||||||||| || ||||| |||||||||||
Sbjct 26880861 CGCTAAGCGTCATCGCAAGGTTTTGCGCGATAACATCCAGGGCATCACTAAGCCAGCTAT 26880802
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || || |||||||| || || |||||||| | ||||| | ||||||| ||||
Sbjct 26880801 CCGGCGCCTTGCTCGTCGCGGCGGTGTCAAGCGAATTTCTGGCCTTATCTATGAGGAGAC 26880742
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | |||| ||||| | ||||| ||| ||| || | ||| ||| || || || ||
Sbjct 26880741 TCGCGGTGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGACGCTGTCACTTACACAGA 26880682
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| ||||| ||||| || || | |||||| | ||||| || |||| || || ||
Sbjct 26880681 GCACGCCAAACGCAAGACCGTGACAGCAATGGATGTGGTCTACGCGCTGAAGCGACAGGG 26880622
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | |||| || || ||
Sbjct 26880621 GCGCACTCTTTACGGCTTCGG 26880601
Score = 152 bits (168), Expect = 8e-33
Identities = 196/268 (73%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| | | || || || |||||||| || ||||||||||| || ||
Sbjct 26641439 GCCAAGCGCCACCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 26641497
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| |||||||| || ||||| || || ||||| ||||||| || |||| || ||||
Sbjct 26641498 CCGGCGTCTGGCCCGGCGTGGCGGTGTGAAGCGGATCTCTGGTCTGATCTACGAGGAGAC 26641557
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || | ||| | || | ||| ||| |||| ||| ||| || |||||| ||
Sbjct 26641558 TCGCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 26641617
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 26641618 GCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 26641677
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | ||||||| ||||| |||||
Sbjct 26641678 ACGCACCCTTTATGGCTTTGGCGGTTAA 26641705
Score = 150 bits (166), Expect = 3e-32
Identities = 196/271 (72%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | | | || ||||| |||||||| ||||||||||| || ||
Sbjct 26646924 GCCAAGCGTCACCGAAAAGTGTTGCGGGATAATATCCAAGGCATCACCAAGCCGGCCATT 26646865
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || || ||| | |||||||| || ||||| |||| || ||| | ||||| |||| |
Sbjct 26646864 CGGCGCCTTGCTAGGCGTGGTGGGGTTAAGCGAATCTCCGGTTTGATTTATGAGGAGACT 26646805
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| | ||| | || || ||| ||| |||| || || | ||| || |||
Sbjct 26646804 CGTGGCGTTCTCAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 26646745
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||||||||| |||||||| | || || || | || ||||||||
Sbjct 26646744 CACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTCAAGCGTCAAGGA 26646685
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
|| | | || || || || |||||||||
Sbjct 26646684 CGCACCCTGTACGGCTTCGGCGGTTAATCTT 26646654
Score = 149 bits (164), Expect = 1e-31
Identities = 189/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| ||||| | || || ||||||||||| || || || || ||||||||
Sbjct 26725114 GCTAAGCGCCATCGTAAGGTGCTCCGGGATAACATCCAGGGCATTACAAAACCAGCTATT 26725173
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| ||||||| || ||||| |||||||| | || || | ||||||| |||| |
Sbjct 26725174 CGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTTATCTATGAGGAGACT 26725233
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | ||| | ||| | ||| |||||| | || || || |||||| |||
Sbjct 26725234 CGAGGTGTGCTTAAGGTTTTCTTAGAGAACGTTATTCGAGACGCCGTCACCTATACGGAG 26725293
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || || |||||||| |||||||| | || || || | |||||||| ||
Sbjct 26725294 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATACGCCCTAAAACGTCAGGGG 26725353
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | ||||| |||||
Sbjct 26725354 CGCACTCTGTATGGCTTTGG 26725373
Score = 147 bits (162), Expect = 3e-31
Identities = 196/270 (73%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
|||||||||||| || || || || |||||||||||||| || || |||||||| ||||
Sbjct 26815652 CGCTAAGCGTCACCGTAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCTGCTA 26815710
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || || |||||||| || || |||||||| | ||||| | |||| || ||||
Sbjct 26815711 TCCGGCGCCTTGCTCGTCGCGGGGGTGTCAAGCGCATTTCTGGTCTCATCTACGAGGAGA 26815770
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||| | ||| ||||| | || || | | ||| || | ||| ||| | || || |
Sbjct 26815771 CTCGCGGGGTTCTGAAGGTGTTTCTGGAAAACGTGATTCGTGACGCTGTGACTTACACGG 26815830
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| ||||| ||||| || || | |||||| | ||||| || |||| || || |
Sbjct 26815831 AGCACGCCAAACGCAAGACAGTGACAGCGATGGATGTGGTCTACGCGCTGAAGCGACAGG 26815890
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700
| || | |||| || || || | ||||
Sbjct 26815891 GACGCACTCTTTACGGCTTCGGCGGCTAAT 26815920
Score = 138 bits (152), Expect = 2e-28
Identities = 187/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || || | | || || || || ||||| || ||||||||||| || ||
Sbjct 28413760 CGCTAAGCGCCACCGTAAAGTACTGCGCGACAATATCCAGGGTATCACCAAGCCGGCCAT 28413701
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || || ||||| || || || || ||||| |||| || | |||| || ||||
Sbjct 28413700 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 28413641
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || | ||| | ||||| ||| ||| |||| || || | |||||| ||
Sbjct 28413640 TCGCGGGGTGCTTAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTATACAGA 28413581
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||| || ||||| |||||| |||||||| | ||||| || | || || || ||
Sbjct 28413580 GCACGCTAAGCGCAAGACGGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 28413521
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || ||||| ||
Sbjct 28413520 CCGCACCCTCTACGGTTTCGG 28413500
Score = 131 bits (144), Expect = 3e-26
Identities = 185/260 (71%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| || || || |||||||| || |||||||||||||| ||
Sbjct 27708237 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCAGCCATT 27708296
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| ||||| || || || || ||||| ||||||| | |||| || ||||
Sbjct 27708297 CGGCGTCTTGCTCGCCGCGGCGGTGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGACC 27708356
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | ||||| ||| ||| |||| || || | ||| || |||
Sbjct 27708357 CGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 27708416
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| |||||| ||||||| | ||||| || | || || || |||
Sbjct 27708417 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 27708476
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | ||||| || ||
Sbjct 27708477 CGCACCCTCTATGGCTTCGG 27708496
Score = 120 bits (132), Expect = 5e-23
Identities = 183/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || |||| | ||| || || ||||| || || ||||||||||| || ||
Sbjct 28453295 CGCTAAGCGCCACCGCAAAGTTCTGCGCGACAACATTCAGGGCATCACCAAGCCCGCCAT 28453236
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || ||||| || || ||||| |||| || | | || || ||||
Sbjct 28453235 CCGACGCCTGGCACGGCGTGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAGAC 28453176
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | || | || | ||| || |||| ||||| | ||| || ||
Sbjct 28453175 ACGCGGAGTTCTTAAAGTGTTTTTGGAGAATGTAATCCGCGATGCAGTTACCTACACGGA 28453116
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| ||||| ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 28453115 GCACGCCAAACGCAAGACAGTCACAGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 28453056
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | ||||| |||||
Sbjct 28453055 CCGCACCCTCTATGGCTTTGG 28453035
>seq27780
Length=10000
Score = 132 bits (146), Expect = 8e-27
Identities = 188/262 (72%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | | | || || || || |||||||||||||||||||| || |
Sbjct 1350 CGCCAAGCGTCACCGTA-AGGTATTGCGTGACAATATCCAAGGAATCACCAAGCCCGCCA 1292
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || |||||||| || || || ||||||||| | ||||| | | ||||| || |
Sbjct 1291 TCCGCCGCCTGGCTCGCCGGGGCGGCGTCAAGCGTATTTCTGGCCTCATTTATGAGGAAA 1232
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||| | || |||| | ||||| | | || |||| |||||| || ||| || |
Sbjct 1231 CTCGCGGAGTGCTGAAAGTTTTCCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 1172
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| ||||| ||||| ||||| ||||||| | || || || | || || || |
Sbjct 1171 AGCACGCCAAACGCAAGACAGTCACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 1112
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
| || | | ||||| || ||
Sbjct 1111 GACGCACTCTGTATGGCTTCGG 1090
>seq1
Length=228908639
Score = 127 bits (140), Expect = 3e-25
Identities = 176/244 (72%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| || |||| | |||| |||| ||||| || || ||||||||||| || |
Sbjct 128812094 CGCTAAGCGCCACCGCA-AGGTCTTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 128812152
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || ||||| ||||| ||||| || || ||||| ||||||| | | || || ||||
Sbjct 128812153 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 128812212
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | ||| ||||| | ||||| ||| || || | || || || ||| ||||
Sbjct 128812213 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGGGACGCAGTCACCTACACCG 128812272
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| |||||||| | || || || | || || || |
Sbjct 128812273 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 128812332
Query 16671 GCCG 16674
| ||
Sbjct 128812333 GGCG 128812336
Score = 127 bits (140), Expect = 3e-25
Identities = 176/244 (72%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| || |||| | |||| |||| ||||| || || ||||||||||| || |
Sbjct 128840403 CGCTAAGCGCCACCGCA-AGGTCTTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 128840345
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || ||||| ||||| ||||| || || ||||| ||||||| | | || || ||||
Sbjct 128840344 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 128840285
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | ||| ||||| | ||||| ||| || || | || || || ||| ||||
Sbjct 128840284 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGGGACGCAGTCACCTACACCG 128840225
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| |||||||| | || || || | || || || |
Sbjct 128840224 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 128840165
Query 16671 GCCG 16674
| ||
Sbjct 128840164 GGCG 128840161
>seq646
Length=133456746
Score = 125 bits (138), Expect = 1e-24
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || ||||||||||| || || ||||| || || || ||||| || || |||||
Sbjct 14677483 CTGCGGGACAACATCCAAGGCATTACAAAGCCGGCGATTCGCCGTCTCGCCCGACGTGGG 14677424
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| | ||||| | |||| || |||| || | || | || |||||
Sbjct 14677423 GGCGTCAAGCGCATTTCTGGTCTCATCTACGAGGAGACCCGGGGAGTCCTCAAAGTCTTC 14677364
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| ||| || | || || |||||||| || || ||||| |||
Sbjct 14677363 CTGGAGAACGTGATCCGTGACGCGGTGACTTACACGGAGCACGCCAAGCGCAAGACCGTC 14677304
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| | || || || ||||||| || || || | |||||||||| ||
Sbjct 14677303 ACGGCCATGGATGTGGTGTACGCGCTGAAACGCCAGGGTCGCACCCTTTATGGTTTCGG 14677245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79037977647723
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