Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq931 203 3e-47 seq39 113 5e-20 seq377 95.1 1e-14 seq1 95.1 1e-14 >seq931 Length=156331669 Score = 203 bits (224), Expect = 3e-47 Identities = 535/813 (66%), Gaps = 22/813 (3%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || ||||||| ||| | ||| ||| |||| | || ||| | || | Sbjct 44829960 TTCATTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTC 44830019 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| | || || || || ||||||| | ||| ||| Sbjct 44830020 ATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATA 44830074 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 ||| |||| |||||||| | || | || | || || |||||||||| | Sbjct 44830075 TTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCC-AG 44830133 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 44830134 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 44830193 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | || || |||||| || || | | ||| Sbjct 44830194 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAAT 44830253 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 ||| | | | | |||| |||| | | ||| | ||||| |||||||| Sbjct 44830254 TATTTCTCTCACTTTCTCCTCCGATGGTTTGTG----TACCAGG--TGTTTGAACATCAA 44830307 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||||||||| || ||||| ||||| || || || | |||||| ||||| || | Sbjct 44830308 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 44830367 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| ||||| || || | ||| ||||| || ||||| | || |||||||| Sbjct 44830368 GCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAA 44830427 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 ||||| || || ||||| || || || | ||||||| || |||| ||||| ||| Sbjct 44830428 GATGCCTTCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCC 44830487 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| ||||| | |||||| | || | |||| || || ||||| || || Sbjct 44830488 AATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATT 44830546 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || ||| | |||| | | ||| | ||| ||||||||| Sbjct 44830547 GAAGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACAT 44830606 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||||||||||| ||||| || || || || || || || ||||| | || |||| | Sbjct 44830607 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 44830666 Query 21835 TTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||||| | | | |||||| | |||| |||||||||||||| |||||||| || | Sbjct 44830667 CTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTG 44830725 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATC 21926 |||| || ||| | || ||||||||||| Sbjct 44830726 CAAAGAAAACCAGAACATGGGATATAAAATATC 44830758 >seq39 Length=107640188 Score = 113 bits (124), Expect = 5e-20 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | ||||||||||||||| | |||||||| | ||||| || || Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| ||||| |||||||| | || |||||||||||||| || || |||||||| || Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 97368720 Query 21620 ACTAATCGTTCACCGTATGTAG 21641 || | |||||||| ||| ||| Sbjct 97368721 ACAACACGTTCACC-TATTTAG 97368741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 97366483 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 97366542 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 97366543 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 97366602 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 97366603 TTCTCCATAAAGTCAAATGGGTTCTC 97366628 >seq377 Length=146757320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 || |||||||||| ||||| || | ||| || |||||| ||| || ||||| | | | Sbjct 103151078 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAA 103151137 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||| || ||||| ||| || || |||||||| |||||||| || || || Sbjct 103151138 AACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGT 103151197 Query 21243 ATTCCATAAAATCAAATGGATTTTC 21267 ||||||||||||||| |||||||| Sbjct 103151198 TTTCCATAAAATCAAAAGGATTTTC 103151222 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 || |||||||||| ||||| || | ||| || |||||| ||| || ||||| | | | Sbjct 103176337 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAA 103176278 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||| || ||||| ||| || || |||||||| |||||||| || || || Sbjct 103176277 AACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGT 103176218 Query 21243 ATTCCATAAAATCAAATGGATTTTC 21267 ||||||||||||||| |||||||| Sbjct 103176217 TTTCCATAAAATCAAAAGGATTTTC 103176193 >seq1 Length=228908639 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||||||||||| | ||||| || || || || || | || ||||| | || Sbjct 140322509 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGC 140322568 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | ||||| || |||||| | ||||||||||||||||||| ||||| Sbjct 140322569 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 140322628 Query 21886 ACTGGCGGCAAAAAATGCCA 21905 ||| || ||||| || |||| Sbjct 140322629 ACTTGCTGCAAAGAAAGCCA 140322648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531630122331640