Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq931 203 3e-47
seq39 113 5e-20
seq377 95.1 1e-14
seq1 95.1 1e-14
>seq931
Length=156331669
Score = 203 bits (224), Expect = 3e-47
Identities = 535/813 (66%), Gaps = 22/813 (3%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || ||||||| ||| | ||| ||| |||| | || ||| | || |
Sbjct 44829960 TTCATTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTC 44830019
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| | || || || || ||||||| | ||| |||
Sbjct 44830020 ATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATA 44830074
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
||| |||| |||||||| | || | || | || || |||||||||| |
Sbjct 44830075 TTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCC-AG 44830133
Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360
|||| ||| ||||| ||||| || || ||||| ||||| |||||||| || ||
Sbjct 44830134 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 44830193
Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420
| || ||||| | || | || | || || |||||| || || | | |||
Sbjct 44830194 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAAT 44830253
Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474
||| | | | | |||| |||| | | ||| | ||||| ||||||||
Sbjct 44830254 TATTTCTCTCACTTTCTCCTCCGATGGTTTGTG----TACCAGG--TGTTTGAACATCAA 44830307
Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534
|| ||||||||||| || ||||| ||||| || || || | |||||| ||||| || |
Sbjct 44830308 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 44830367
Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594
|| ||||| ||||| || || | ||| ||||| || ||||| | || ||||||||
Sbjct 44830368 GCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAA 44830427
Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654
||||| || || ||||| || || || | ||||||| || |||| ||||| |||
Sbjct 44830428 GATGCCTTCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCC 44830487
Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714
||||| ||||| | |||||| | || | |||| || || ||||| || ||
Sbjct 44830488 AATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATT 44830546
Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774
|| ||| | |||| | | ||| | ||| |||||||||
Sbjct 44830547 GAAGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACAT 44830606
Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834
|||||||||||| ||||| || || || || || || || ||||| | || |||| |
Sbjct 44830607 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 44830666
Query 21835 TTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893
||||| | | | |||||| | |||| |||||||||||||| |||||||| || |
Sbjct 44830667 CTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTG 44830725
Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATC 21926
|||| || ||| | || |||||||||||
Sbjct 44830726 CAAAGAAAACCAGAACATGGGATATAAAATATC 44830758
>seq39
Length=107640188
Score = 113 bits (124), Expect = 5e-20
Identities = 111/142 (78%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559
||||| || || || | ||||||||||||||| | |||||||| | ||||| || ||
Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660
Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619
| ||| ||||| |||||||| | || |||||||||||||| || || |||||||| ||
Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 97368720
Query 21620 ACTAATCGTTCACCGTATGTAG 21641
|| | |||||||| ||| |||
Sbjct 97368721 ACAACACGTTCACC-TATTTAG 97368741
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | ||||||| | ||||
Sbjct 97366483 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 97366542
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||||||||||| ||| |||
Sbjct 97366543 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 97366602
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||||| |||||||| || ||
Sbjct 97366603 TTCTCCATAAAGTCAAATGGGTTCTC 97366628
>seq377
Length=146757320
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182
|| |||||||||| ||||| || | ||| || |||||| ||| || ||||| | | |
Sbjct 103151078 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAA 103151137
Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242
||||| || ||||| ||| || || |||||||| |||||||| || || ||
Sbjct 103151138 AACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGT 103151197
Query 21243 ATTCCATAAAATCAAATGGATTTTC 21267
||||||||||||||| ||||||||
Sbjct 103151198 TTTCCATAAAATCAAAAGGATTTTC 103151222
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182
|| |||||||||| ||||| || | ||| || |||||| ||| || ||||| | | |
Sbjct 103176337 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAA 103176278
Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242
||||| || ||||| ||| || || |||||||| |||||||| || || ||
Sbjct 103176277 AACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGT 103176218
Query 21243 ATTCCATAAAATCAAATGGATTTTC 21267
||||||||||||||| ||||||||
Sbjct 103176217 TTTCCATAAAATCAAAAGGATTTTC 103176193
>seq1
Length=228908639
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
||||||||||||||||||| | ||||| || || || || || | || ||||| | ||
Sbjct 140322509 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGC 140322568
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|||| | ||||| || |||||| | ||||||||||||||||||| |||||
Sbjct 140322569 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 140322628
Query 21886 ACTGGCGGCAAAAAATGCCA 21905
||| || ||||| || ||||
Sbjct 140322629 ACTTGCTGCAAAGAAAGCCA 140322648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531630122331640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |