Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq931 390 1e-103 seq1 163 4e-35 seq39 114 2e-20 seq638 111 2e-19 seq377 111 2e-19 seq860 93.3 5e-14 >seq931 Length=156331669 Score = 390 bits (432), Expect = 1e-103 Identities = 652/937 (70%), Gaps = 18/937 (2%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG---ACATAACTCCCATTT 33013 |||| |||||| ||| ||| | |||| ||| |||| | || ||| |||| ||| Sbjct 44829964 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTCATCC 44830023 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | || || || || || | | || || || ||||| |||| | ||| ||||| | Sbjct 44830024 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44830078 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 || | || ||||| || | || ||| || |||| |||| ||| || | Sbjct 44830079 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44830138 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 ||| || || || || || || ||| ||||| | |||||||| || || || | Sbjct 44830139 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44830198 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253 | || || | ||| | || || ||||||||||| || || |||| | || || Sbjct 44830199 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44830258 Query 33254 ATCTAACGGTTTCTTCACTCGGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGA 33310 ||| || ||||| | | || ||| | | | | ||||| |||||||| || || | Sbjct 44830259 CTCTCAC--TTTCTCCTC-CGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAA 44830315 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 |||| ||||| | |||||| ||||| ||||| ||||| |||||||||||||| || |||| Sbjct 44830316 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 44830375 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | | || || || || ||||| ||||| || || || || |||||||||||||| |||| Sbjct 44830376 TCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTT 44830435 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACT 33487 |||||||||| ||||| | || || ||||| | | | |||| ||||| Sbjct 44830436 CTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGC 44830495 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 |||||||| |||||||| || ||||||||||||||| | |||||||| |||||| Sbjct 44830496 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAGAA 44830554 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 | | |||| || |||||| | ||||| || || | |||||||||||||| |||| Sbjct 44830555 ATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44830614 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | |||||||| ||||| || || || || |||||||| | || || |||||||| ||| Sbjct 44830615 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44830674 Query 33668 CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 | | |||||| ||| ||||||||||||| ||||| || ||||| |||||||| || Sbjct 44830675 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44830734 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33787 ||| ||||| |||||||||| | || || || | || | ||| | || | Sbjct 44830735 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGT 44830794 Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 | || || | || || || || ||||| || || ||||| ||||| |||||||| | Sbjct 44830795 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 44830854 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 |||||| |||| || | ||| ||||| || ||||| Sbjct 44830855 GCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891 Score = 183 bits (202), Expect = 4e-41 Identities = 316/450 (70%), Gaps = 18/450 (4%) Strand=Plus/Minus Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375 ||||| | |||||| || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 144506184 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144506125 Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435 || | || || ||||| ||||| || || || |||||||||||| | | ||| | Sbjct 144506124 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCGCC 144506065 Query 33436 GCAGCAAAGGCA--AT--AAGTCTCTCTCCATAACCGGCGCTGTCAT-GT-----ATCCA 33485 |||||||| || || | ||||||| || |||| | || ||||| Sbjct 144506064 AGGGCAAAGGCTGCATGCAACACGTTCTCCATG---GGTAATGTCTTTGTTCCCAATCCA 144506008 Query 33486 -CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 | || ||||| | |||||||| || ||||| ||||||||||| |||||| | |||| Sbjct 144506007 ACACAAGA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGCACTGAAGA 144505950 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 || | | |||| || |||||||| ||| || || || | ||| ||| ||||| | Sbjct 144505949 GAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAG 144505892 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 ||| |||||||| || || || || || || ||||| || | || |||||||| | Sbjct 144505891 AATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTGTAATCTGAA 144505832 Query 33665 CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 ||||| | |||| ||||| | || ||||||| | ||| || |||| ||||| || | Sbjct 144505831 CTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATGCTGCGAAGA 144505772 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTT 33754 | |||| | ||| |||||||||| ||| Sbjct 144505771 AAGCCAGAATATGGGATATAAAATATCTTT 144505742 >seq1 Length=228908639 Score = 163 bits (180), Expect = 4e-35 Identities = 241/336 (72%), Gaps = 13/336 (4%) Strand=Plus/Plus Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTG 33474 |||||||| |||| |||||||||||||| | || | || ||||| | | | || Sbjct 140322339 AAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTTTG 140322398 Query 33475 TCAT--GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 || ||| | ||| | || |||| |||||||| |||||||| ||||| | Sbjct 140322399 TCCCCAGTA-CAACTCAAG-GCGCAATTTGCCTTCTTG---ACACAAGGT---GTTTCAA 140322450 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 ||| || |||||| | | |||| || |||||| | ||||| || || | |||| Sbjct 140322451 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140322510 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||||||||| ||||| ||||||| ||||| || || || | |||||||| | || | Sbjct 140322511 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140322570 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 | |||||||| |||||| | |||||| ||| |||| |||||||| ||||| || |||| Sbjct 140322571 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 140322630 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 33748 | |||||||| || |||| ||| | |||||||| Sbjct 140322631 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140322666 >seq39 Length=107640188 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| || ||||| ||||| |||||||| || || || || | Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || |||||||| || ||||| ||||||||||||| Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718 Query 33446 C 33446 | Sbjct 97368719 C 97368719 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 97370970 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 97371029 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 97371030 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97371089 Query 33684 CGCC 33687 | || Sbjct 97371090 CACC 97371093 >seq638 Length=135235416 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 3898777 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 3898718 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 3898717 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 3898658 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 3898657 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 3898607 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 3895939 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 3895880 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 3895879 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3895820 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 3895819 CTGTTTCTTATACCATA 3895803 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 3884847 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 3884788 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 3884787 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 3884728 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 3884727 AGGCTCCAGGTAAATAGC 3884710 >seq377 Length=146757320 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 103162977 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 103163036 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| | ||||||||| ||||||||||| Sbjct 103163037 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGC 103163095 >seq860 Length=57935654 Score = 93.3 bits (102), Expect = 5e-14 Identities = 180/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 51798142 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 51798085 Query 31105 TCCAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATT 31163 || | |||||||| || | || |||| | | || ||||| || |||| ||| || | || Sbjct 51798084 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 51798025 Query 31164 T-ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAAT 31222 | || | |||| | ||| | | ||||| || | || || | ||||| ||||||| Sbjct 51798024 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 51797965 Query 31223 CTTCGTCTATTACACCGCCTCCTATAT---CAATGCCTTTTAGGGACAGACCAGACCTAG 31279 |||| ||| | ||||| |||||| || ||| | |||| | || |||||||| | Sbjct 51797964 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 51797905 Query 31280 GAGCTATTCTACCATAGCA 31298 |||||| ||| ||||| || Sbjct 51797904 GAGCTACTCT-CCATAACA 51797887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622630189956760