Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq646 86.0 6e-12 >seq646 Length=133456746 Score = 86.0 bits (94), Expect = 6e-12 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 26752 CTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCA 26811 |||||| |||| |||| |||| | || || || || | ||||| || | |||||| Sbjct 124983179 CTTTTTTGTCAGACAA--TGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCC 124983122 Query 26812 TCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 26871 |||| | || | | |||||||||||| | ||||| |||||| || || |||| Sbjct 124983121 TCGAGGTCGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAG 124983062 Query 26872 GGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 | || ||||| || || || || || || | | || ||||| || ||||||| | | Sbjct 124983061 GCATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCA 124983002 Query 26932 ACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAG 26991 | | || || ||||| || ||||| ||||| | || ||||| || | || |||| Sbjct 124983001 CCCTGTCTGATTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAG 124982942 Query 26992 GAGG 26995 | || Sbjct 124982941 GTGG 124982938 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | ||||| || | |||||| |||| | || | | Sbjct 124982481 AATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAG 124982422 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| |||||| ||||| ||||| || ||||| || || Sbjct 124982421 TGACACCATCGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 124982362 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | ||| || || || ||||||| | | | | ||||| || Sbjct 124982361 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 124982302 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||| ||||| | || ||||| || | || ||||| || Sbjct 124982301 CATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 124982254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478418814687920