Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq646 100 2e-16 seq168 82.4 7e-11 >seq646 Length=133456746 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| || | || ||| |||| |||||| ||| Sbjct 124982481 AATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAG 124982422 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| |||||| ||||| |||||||| ||||| || || Sbjct 124982421 TGACACCATCGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 124982362 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||| ||||| || ||||||| | | | | || || || Sbjct 124982361 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 124982302 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || ||||| ||||| Sbjct 124982301 CATCCAGAAAGAGTCTAC 124982284 Score = 100 bits (110), Expect = 2e-16 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23974 CTTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCA 24033 |||||| | || |||| |||| | || || || || | ||||| || | || ||| Sbjct 124983179 CTTTTTTGTCAGACAA--TGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCC 124983122 Query 24034 TCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 24093 |||| |||||| ||| |||||||||||| | ||||| |||||| || || |||| Sbjct 124983121 TCGAGGTCGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAG 124983062 Query 24094 GCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA 24153 |||| ||||| || || ||||| ||||| | | || || || || ||||||| | | Sbjct 124983061 GCATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCA 124983002 Query 24154 ACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | ||||| ||||| || ||||| ||||| Sbjct 124983001 CCCTGTCTGATTACAACATCCAGAAAGAGTCTAC 124982968 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| ||| Sbjct 124982708 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGT 124982649 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||| ||||| |||||||| ||||| || || Sbjct 124982648 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 124982589 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | || ||||| || || |||| Sbjct 124982588 CAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATG 124982552 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | || |||||| ||| Sbjct 124982936 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 124982877 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||| ||||| |||||||| ||||| || || Sbjct 124982876 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 124982817 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | || ||||| || ||||||| Sbjct 124982816 CAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATG 124982780 >seq168 Length=201391403 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || ||||| | || ||| |||| || || | Sbjct 5653670 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAACC 5653729 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 5653730 CTCGGATACGATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGGAATTCCTCCTGA 5653789 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||||||||||| | | |||||||| || ||||||| | | | || || Sbjct 5653790 TCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTA 5653849 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 || |||||||| || ||||| ||||| | ||||| ||| Sbjct 5653850 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGA 5653889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429722680670205