Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq219 105 5e-18 seq646 95.1 1e-14 seq287 82.4 6e-11 >seq219 Length=165317712 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 62366579 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366638 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 62366639 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366698 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | | ||||| | ||||||| Sbjct 62366699 ATGCCTTCTTTATCCTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 62366756 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || ||||| || || || || |||||||| Sbjct 62366757 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 62366805 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 57062624 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 57062683 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| || || || Sbjct 57062684 AGAGTACCGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGTGGGGG 57062743 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | | ||||| | ||||||| Sbjct 57062744 ATGCCTTCTTTATCTTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 57062801 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || |||||||| || || || || |||||||| Sbjct 57062802 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 57062850 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 62366807 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366866 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 62366867 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 62366926 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || |||||| | | | ||||| | ||||||| Sbjct 62366927 ATGCCTTCCTTATCCTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 62366984 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || ||||| || ||||| || || |||||||||||| Sbjct 62366985 CCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 62367037 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 62366365 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 62366424 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || Sbjct 62366425 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATC 62366484 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| |||||| Sbjct 62366485 TTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 62366542 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || || || || |||||||| Sbjct 62366543 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62366577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| |||||| || |||| || || ||||||||||| | Sbjct 57062852 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCTACTCTTTCTGGATGTTGTAGTCAGAA 57062911 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | | | | || ||| || ||||| ||| | || |||| ||| ||||| || || Sbjct 57062912 AGACTGCGGCCATCTTCCCGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC-ACGGGG 57062970 Query 16829 AC-GCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| ||||| || |||| ||| || | | | |||| | | ||||||| Sbjct 57062971 ATTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCAC 57063030 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||| | ||||||| | || || || || ||||| || || |||||||||||| Sbjct 57063031 TTCAAGGGTGATGATCTTGCCAGTAAGGGTTTTCACGAAGATCTGCATTTTG 57063082 >seq646 Length=133456746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | || ||| ||||| Sbjct 124982040 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT----GCGTC 124982095 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| ||||| || ||| | || | || ||| ||||| ||| | ||| || | Sbjct 124982096 CATCTTCCAGCTGTTTCCCAGCAAAGATTAACCTCTGCTGGTCAGGAGGGATGCCTTCCT 124982155 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || ||||| ||| || | | | ||||| | ||||||| || | ||| Sbjct 124982156 TGTCTTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGT 124982213 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| || || || || |||||||| Sbjct 124982214 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 124982252 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || ||||||||||| | || ||| | ||| Sbjct 124982497 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 124982556 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || ||| | || | || ||| ||||| ||| | ||| || ||||| Sbjct 124982557 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 124982616 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||| | |||||| || | |||||||| Sbjct 124982617 TGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGG 124982674 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 124982675 TCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982708 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 124982709 CCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 124982768 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || | || ||| ||||| ||| Sbjct 124982769 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 124982828 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || ||||| ||| || | | | ||||| | |||||| Sbjct 124982829 GATGCCTTCCTTGTCTTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCG 124982886 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 124982887 ACCTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| || ||||| || || ||||||||||| | Sbjct 124982253 CCCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 124982312 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 || ||| |||||| |||| || || || ||| | || | || ||| ||||| Sbjct 124982313 CAGGGT----GCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAG 124982368 Query 16824 CAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGG 16881 ||| | ||| || ||||| || ||||| ||| || | | | ||||| | ||| Sbjct 124982369 GAGGGATGCCTTCCTTGTCTTGGATCTTTGC--CTTGACGTTCTCGATGGTGTCACTGGG 124982426 Query 16882 CTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| || | ||||||||| || || ||||| || || || || ||||||||| Sbjct 124982427 CTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCATT 124982481 >seq287 Length=159110946 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||| || || |||||| |||| | | || | | ||||||| ||| Sbjct 25710642 TGCAGGATGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGT 25710701 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||||||| | || || || || ||||| | || | |||||| ||||| ||||| Sbjct 25710702 TTGCCCGCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTCGAATTTCG 25710761 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | ||||| | |||||| || | ||||||||| || || || Sbjct 25710762 GCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTG 25710821 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || |||| |||||||| Sbjct 25710822 AGGGTCTTCGCAAAGATCTGCAT 25710844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404887009385890