Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq931 361 7e-95
seq1 143 3e-29
seq39 120 4e-22
seq638 114 2e-20
seq860 84.2 3e-11
>seq931
Length=156331669
Score = 361 bits (400), Expect = 7e-95
Identities = 642/934 (69%), Gaps = 12/934 (1%)
Strand=Plus/Plus
Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGAG---ACATAACTCCCATTT 32370
|||| |||||| ||| || | |||| ||| |||| | || ||| |||| |||
Sbjct 44829964 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTCATCC 44830023
Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430
| || || || || || | | || || || ||||| || | | ||| ||||| |
Sbjct 44830024 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44830078
Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490
|| | || || ||||| | || ||| || |||| |||| ||| || |
Sbjct 44830079 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44830138
Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550
||| ||||| ||||| || || ||| ||||| | |||||||| || || || |
Sbjct 44830139 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44830198
Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610
| || || | ||| | || || ||||||||||| || || || | | || ||
Sbjct 44830199 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44830258
Query 32611 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 32670
||| ||| | || || ||| | | | ||||| |||||||| || || ||||
Sbjct 44830259 CTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44830318
Query 32671 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 32730
| ||||||| |||||| ||||| ||||| | ||| |||||||||||||| || |||||
Sbjct 44830319 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44830378
Query 32731 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 32790
| || || || || ||||| ||||| || ||||| || ||||||||||| || |||||||
Sbjct 44830379 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44830438
Query 32791 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 32847
|||| || ||||| | || || ||||| | | | |||| |||||
Sbjct 44830439 CTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44830498
Query 32848 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 32907
|||||||| |||||||| || ||||||||||| || || || ||||| |||||| | |
Sbjct 44830499 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATT 44830557
Query 32908 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 32967
|||| || |||||| | || || ||||| | |||||||||||||| ||||| |
Sbjct 44830558 CCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44830617
Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027
||||||| ||||| ||||| || || ||||| || | || || |||||||| ||| |
Sbjct 44830618 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44830677
Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087
| |||||| || | ||||||||||| ||||| || ||||| |||||||| || |||
Sbjct 44830678 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44830737
Query 33088 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 33147
||||| |||||||||| | || || || | || | ||| | || || |
Sbjct 44830738 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGTCCT 44830797
Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207
| || | ||||| || || ||||| || || ||||| ||||| |||||||| | ||
Sbjct 44830798 TGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCC 44830857
Query 33208 AGATGTCATGATATTGAATTGGAAAAATAACAAA 33241
|||| ||||| || | || || || || |||||
Sbjct 44830858 AGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891
Score = 192 bits (212), Expect = 7e-44
Identities = 382/557 (69%), Gaps = 18/557 (3%)
Strand=Plus/Minus
Query 32673 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 32732
||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| ||
Sbjct 144506184 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144506125
Query 32733 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 32792
|| | || || ||||| ||||| ||||| || ||||||||||| | | ||| |
Sbjct 144506124 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCGCC 144506065
Query 32793 GCCGCAAAGGC--AAT--AAGTCTCTCTCCATAACCGGCGCTGTC-ATGT-----ATCC- 32841
|||||||| || || | ||||||| || |||| ||| ||||
Sbjct 144506064 AGGGCAAAGGCTGCATGCAACACGTTCTCCAT---GGGTAATGTCTTTGTTCCCAATCCA 144506008
Query 32842 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 32901
|| || ||||| | |||||||| || |||| |||||| || || || ||| | ||||
Sbjct 144506007 ACACAAGA-CCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGGCACTGAAGA 144505950
Query 32902 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961
|| | | |||| || |||||||| |||||| ||||| | ||| ||| ||||| |
Sbjct 144505949 GAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAG 144505892
Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTA 33021
||| |||||||| || || ||||| || || |||||||| | || |||||||| |
Sbjct 144505891 AATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTGTAATCTGAA 144505832
Query 33022 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081
||||| | |||| |||| | || ||||||| | ||| || |||| ||||| || |
Sbjct 144505831 CTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATGCTGCGAAGA 144505772
Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33141
| |||| | ||| |||||||||| ||| || || | || | ||| | |
Sbjct 144505771 AAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAGTGCCAAA 144505712
Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33201
| || || || | ||||| || | | |||| || || ||||| | || || ||||
Sbjct 144505711 TGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTTTACA 144505652
Query 33202 TATTCCAGATGTCATGA 33218
| ||||| || ||||||
Sbjct 144505651 TTTTCCAAATATCATGA 144505635
>seq1
Length=228908639
Score = 143 bits (158), Expect = 3e-29
Identities = 186/256 (73%), Gaps = 6/256 (2%)
Strand=Plus/Plus
Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909
|| |||| |||||||| |||||||| ||| || || | || |||||| | |
Sbjct 140322417 GCGCAATTTGCCTTCTTG---ACACAAGG---TGTTTCAATGGTGTTGAAGAGAAATTCC 140322470
Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969
|||| || |||||| | || || ||||| | |||||||||||||| ||||| ||
Sbjct 140322471 CTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTG 140322530
Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029
||||| ||||| ||||| || | ||||| || | || || |||||||| ||||||
Sbjct 140322531 TTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGG 140322590
Query 33030 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33089
| |||||| || | || |||||||| ||||| || ||||| |||||||| || ||||
Sbjct 140322591 CTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGA 140322650
Query 33090 ACATGTTTTATAAAAT 33105
||| | ||||||||
Sbjct 140322651 ACACGGGATATAAAAT 140322666
>seq39
Length=107640188
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || |
Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718
Query 32803 C 32803
|
Sbjct 97368719 C 97368719
Score = 100 bits (110), Expect = 4e-16
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980
|||||| | || || ||||| | ||||||||||||||| ||||| |||||||| |||||
Sbjct 97370970 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 97371029
Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040
||||| || || ||||| || | || || |||||||| |||||| | |||||| ||
Sbjct 97371030 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97371089
>seq638
Length=135235416
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976
|||| ||||| || |||||||| || |||||| ||| | || || || || ||||| |
Sbjct 3898777 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 3898718
Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036
||| |||||| |||||||| ||||| || || || || || ||||| || | || || |
Sbjct 3898717 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 3898658
Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 3898657 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 3898607
Score = 107 bits (118), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 3895939 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 3895880
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
||||||||||| |||| || |||||||| || || || ||||| || || | | ||||
Sbjct 3895879 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3895820
Query 62312 CTATTTCTAAGACCGTA 62328
|| ||||| | ||| ||
Sbjct 3895819 CTGTTTCTTATACCATA 3895803
Score = 105 bits (116), Expect = 8e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126
|| |||||||||||| |||||||| |||||||||||||| | || |||||||||| |
Sbjct 3884847 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 3884788
Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186
|| || || |||||||| ||||| || | ||| ||||| | | || || |||||||
Sbjct 3884787 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 3884728
Query 63187 CGGTTCCAAGTATATGGC 63204
|| |||| ||| || ||
Sbjct 3884727 AGGCTCCAGGTAAATAGC 3884710
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| || | ||| |||||||||||||| | || || || || || || || || || |
Sbjct 3869306 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 3869247
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
| ||||| || || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 3869246 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 3869187
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| || || || || ||| | || | |||||||| || |||||
Sbjct 3869186 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 3869141
>seq860
Length=57935654
Score = 84.2 bits (92), Expect = 3e-11
Identities = 178/259 (69%), Gaps = 10/259 (4%)
Strand=Plus/Minus
Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461
|||||| || ||||| ||| ||| | ||| | ||| ||| | | ||| ||||||
Sbjct 51798142 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 51798085
Query 30462 TTCAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATT 30520
| | |||||||| || | || |||| | | || ||||| || |||| ||| || | ||
Sbjct 51798084 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 51798025
Query 30521 T-ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAAT 30579
| || | || | ||| | | ||||| || | || || | |||||| |||||||
Sbjct 51798024 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 51797965
Query 30580 CTTCGTCTATTACACCGCCTCCTATAT---CAATGCCTTTTAGGGACAGACCAGACCTAG 30636
|||| ||| | ||||| |||||| || ||| | |||| | || |||||||| |
Sbjct 51797964 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 51797905
Query 30637 GAGCTATTCTACCATAGCA 30655
|||||| ||| ||||| ||
Sbjct 51797904 GAGCTACTCT-CCATAACA 51797887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633309552595600
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