Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq931 361 7e-95 seq1 143 3e-29 seq39 120 4e-22 seq638 114 2e-20 seq860 84.2 3e-11 >seq931 Length=156331669 Score = 361 bits (400), Expect = 7e-95 Identities = 642/934 (69%), Gaps = 12/934 (1%) Strand=Plus/Plus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGAG---ACATAACTCCCATTT 32370 |||| |||||| ||| || | |||| ||| |||| | || ||| |||| ||| Sbjct 44829964 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTCATCC 44830023 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | || || || || || | | || || || ||||| || | | ||| ||||| | Sbjct 44830024 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44830078 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490 || | || || ||||| | || ||| || |||| |||| ||| || | Sbjct 44830079 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44830138 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 ||| ||||| ||||| || || ||| ||||| | |||||||| || || || | Sbjct 44830139 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44830198 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 | || || | ||| | || || ||||||||||| || || || | | || || Sbjct 44830199 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44830258 Query 32611 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 32670 ||| ||| | || || ||| | | | ||||| |||||||| || || |||| Sbjct 44830259 CTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44830318 Query 32671 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 32730 | ||||||| |||||| ||||| ||||| | ||| |||||||||||||| || ||||| Sbjct 44830319 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44830378 Query 32731 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 32790 | || || || || ||||| ||||| || ||||| || ||||||||||| || ||||||| Sbjct 44830379 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44830438 Query 32791 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 32847 |||| || ||||| | || || ||||| | | | |||| ||||| Sbjct 44830439 CTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44830498 Query 32848 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 32907 |||||||| |||||||| || ||||||||||| || || || ||||| |||||| | | Sbjct 44830499 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATT 44830557 Query 32908 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 32967 |||| || |||||| | || || ||||| | |||||||||||||| ||||| | Sbjct 44830558 CCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44830617 Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027 ||||||| ||||| ||||| || || ||||| || | || || |||||||| ||| | Sbjct 44830618 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44830677 Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 | |||||| || | ||||||||||| ||||| || ||||| |||||||| || ||| Sbjct 44830678 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44830737 Query 33088 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 33147 ||||| |||||||||| | || || || | || | ||| | || || | Sbjct 44830738 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGTCCT 44830797 Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207 | || | ||||| || || ||||| || || ||||| ||||| |||||||| | || Sbjct 44830798 TGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCC 44830857 Query 33208 AGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 |||| ||||| || | || || || || ||||| Sbjct 44830858 AGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891 Score = 192 bits (212), Expect = 7e-44 Identities = 382/557 (69%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 32673 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 32732 ||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 144506184 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144506125 Query 32733 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 32792 || | || || ||||| ||||| ||||| || ||||||||||| | | ||| | Sbjct 144506124 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCGCC 144506065 Query 32793 GCCGCAAAGGC--AAT--AAGTCTCTCTCCATAACCGGCGCTGTC-ATGT-----ATCC- 32841 |||||||| || || | ||||||| || |||| ||| |||| Sbjct 144506064 AGGGCAAAGGCTGCATGCAACACGTTCTCCAT---GGGTAATGTCTTTGTTCCCAATCCA 144506008 Query 32842 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 32901 || || ||||| | |||||||| || |||| |||||| || || || ||| | |||| Sbjct 144506007 ACACAAGA-CCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGGCACTGAAGA 144505950 Query 32902 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961 || | | |||| || |||||||| |||||| ||||| | ||| ||| ||||| | Sbjct 144505949 GAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAG 144505892 Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTA 33021 ||| |||||||| || || ||||| || || |||||||| | || |||||||| | Sbjct 144505891 AATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTGTAATCTGAA 144505832 Query 33022 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081 ||||| | |||| |||| | || ||||||| | ||| || |||| ||||| || | Sbjct 144505831 CTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATGCTGCGAAGA 144505772 Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33141 | |||| | ||| |||||||||| ||| || || | || | ||| | | Sbjct 144505771 AAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAGTGCCAAA 144505712 Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33201 | || || || | ||||| || | | |||| || || ||||| | || || |||| Sbjct 144505711 TGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTTTACA 144505652 Query 33202 TATTCCAGATGTCATGA 33218 | ||||| || |||||| Sbjct 144505651 TTTTCCAAATATCATGA 144505635 >seq1 Length=228908639 Score = 143 bits (158), Expect = 3e-29 Identities = 186/256 (73%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909 || |||| |||||||| |||||||| ||| || || | || |||||| | | Sbjct 140322417 GCGCAATTTGCCTTCTTG---ACACAAGG---TGTTTCAATGGTGTTGAAGAGAAATTCC 140322470 Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969 |||| || |||||| | || || ||||| | |||||||||||||| ||||| || Sbjct 140322471 CTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTG 140322530 Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029 ||||| ||||| ||||| || | ||||| || | || || |||||||| |||||| Sbjct 140322531 TTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGG 140322590 Query 33030 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33089 | |||||| || | || |||||||| ||||| || ||||| |||||||| || |||| Sbjct 140322591 CTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGA 140322650 Query 33090 ACATGTTTTATAAAAT 33105 ||| | |||||||| Sbjct 140322651 ACACGGGATATAAAAT 140322666 >seq39 Length=107640188 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718 Query 32803 C 32803 | Sbjct 97368719 C 97368719 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 97370970 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 97371029 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | || || |||||||| |||||| | |||||| || Sbjct 97371030 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97371089 >seq638 Length=135235416 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 3898777 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 3898718 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| |||||| |||||||| ||||| || || || || || ||||| || | || || | Sbjct 3898717 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 3898658 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 3898657 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 3898607 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 3895939 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 3895880 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 3895879 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3895820 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 3895819 CTGTTTCTTATACCATA 3895803 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 3884847 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 3884788 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 3884787 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 3884728 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 3884727 AGGCTCCAGGTAAATAGC 3884710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 3869306 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 3869247 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 3869246 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 3869187 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 3869186 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 3869141 >seq860 Length=57935654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461 |||||| || ||||| ||| ||| | ||| | ||| ||| | | ||| |||||| Sbjct 51798142 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 51798085 Query 30462 TTCAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATT 30520 | | |||||||| || | || |||| | | || ||||| || |||| ||| || | || Sbjct 51798084 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 51798025 Query 30521 T-ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAAT 30579 | || | || | ||| | | ||||| || | || || | |||||| ||||||| Sbjct 51798024 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 51797965 Query 30580 CTTCGTCTATTACACCGCCTCCTATAT---CAATGCCTTTTAGGGACAGACCAGACCTAG 30636 |||| ||| | ||||| |||||| || ||| | |||| | || |||||||| | Sbjct 51797964 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 51797905 Query 30637 GAGCTATTCTACCATAGCA 30655 |||||| ||| ||||| || Sbjct 51797904 GAGCTACTCT-CCATAACA 51797887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633309552595600