Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq931 262 4e-65 seq1 140 4e-28 seq39 98.7 1e-15 >seq931 Length=156331669 Score = 262 bits (290), Expect = 4e-65 Identities = 537/790 (68%), Gaps = 6/790 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || ||||| || ||||| || ||| | | |||||||| || | Sbjct 44830135 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 44830194 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || ||||| | ||| |||| || || ||| || | | | Sbjct 44830195 AGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATT 44830254 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| | ||| | | | |||||| ||||| | | ||| |||| ||||| ||| Sbjct 44830255 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44830314 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | ||||| || || | || || Sbjct 44830315 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44830373 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | | ||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 44830374 CATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 44830433 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| || || || || || |||| | |||| || | | || || | ||||| Sbjct 44830434 TTCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44830493 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || ||||| | |||||| | ||| | || || || || || Sbjct 44830494 GCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAG 44830552 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | || | |||| ||||| || || || | ||| |||||||||||| Sbjct 44830553 AAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44830612 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| || Sbjct 44830613 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44830672 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 | ||| ||||| ||| || | ||||||||| ||||| ||||| ||||||||| || Sbjct 44830673 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44830732 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575 | ||| | ||| |||||||| | |||| || || || ||||| | | || | Sbjct 44830733 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGA-A 44830791 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 || || || || || || || ||| ||||| || || || || || || || |||| Sbjct 44830792 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 44830851 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | | ||| || || || || | || || || |||||||| || |||||| || | | Sbjct 44830852 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAAGCGGCAAGGGTTTCCTCTCA 44830911 Query 93696 GTAACGGCTC 93705 | | |||||| Sbjct 44830912 GCAGCGGCTC 44830921 Score = 125 bits (138), Expect = 8e-24 Identities = 372/567 (66%), Gaps = 9/567 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 144506197 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 144506139 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||| ||||||||||||| ||||| |||||| ||||||||| | Sbjct 144506138 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGA 144506079 Query 93210 aTATACCTTCCACGGCTGCAAATGC--CA--CAATACGTTCGGCAAAATTTGCGGAATTA 93265 | | | |||| | ||||| || || ||| |||||| || | | || Sbjct 144506078 AGGTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATGTCTTTG 144506019 Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | | ||||| || ||||| | || || ||||| | ||| || | ||||| || Sbjct 144506018 TTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATG 144505960 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || | || || | || | || | |||| || |||| || || | ||| | Sbjct 144505959 GCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAAT--ATGTGTCAATAAGGAGATTA 144505902 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 | |||||||||| | || || || ||||||||||| || ||||| || | ||| Sbjct 144505901 TTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCT 144505842 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || ||||| ||||||||| |||| || |||| ||||||| | ||| ||||| || Sbjct 144505841 GTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACAT 144505782 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565 ||||| || ||||||| ||||| |||||||| | | | ||| || || ||| Sbjct 144505781 GCTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCC 144505722 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || | | | || || || || || || || | | | |||| || || | ||| || Sbjct 144505721 CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACT 144505662 Query 93626 TTTTTGTACATATCCCATATGTCTTGA 93652 || || ||||| | ||| || || ||| Sbjct 144505661 TTCTTTTACATTTTCCAAATATCATGA 144505635 >seq1 Length=228908639 Score = 140 bits (154), Expect = 4e-28 Identities = 176/241 (73%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 93299 TTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCT 93358 ||||| | ||||||| ||||| || | ||| || || | || | || | |||||| Sbjct 140322429 TTCTTGACACAAGGT---GTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCT 140322485 Query 93359 CGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATT 93418 |||||| || || || | ||| ||||||||||||||| || ||||| |||||| Sbjct 140322486 TTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATT 140322545 Query 93419 TGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACG 93478 ||||| | |||||||| | ||||| || ||||| |||||||| ||||| ||| || Sbjct 140322546 TGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACC 140322605 Query 93479 AGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAA 93538 | |||||||| ||||| ||||| ||||||||| ||||||| | | | ||||||| Sbjct 140322606 AAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAA 140322665 Query 93539 T 93539 | Sbjct 140322666 T 140322666 >seq39 Length=107640188 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| ||||| || |||||| ||| Sbjct 97368628 AATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCG 97368687 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || |||||||| || ||||| || |||| |||||| Sbjct 97368688 GAAAAGAAAATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 97368731 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 97370970 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 97371029 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 97371030 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97371089 Query 93475 TAC 93477 || Sbjct 97371090 CAC 97371092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556577420499640