Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq931 262 4e-65
seq1 140 4e-28
seq39 98.7 1e-15
>seq931
Length=156331669
Score = 262 bits (290), Expect = 4e-65
Identities = 537/790 (68%), Gaps = 6/790 (1%)
Strand=Plus/Plus
Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|||| ||| || || ||||| || ||||| || ||| | | |||||||| || |
Sbjct 44830135 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 44830194
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
|| ||||| | || ||||| | ||| |||| || || ||| || | | |
Sbjct 44830195 AGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATT 44830254
Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
|||||| | ||| | | | |||||| ||||| | | ||| |||| ||||| |||
Sbjct 44830255 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44830314
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156
|| || |||||||| || |||| || || || | ||||| || || | || ||
Sbjct 44830315 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44830373
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| | ||||||||||||||||||| ||||| || |||||| ||||||||| || || ||
Sbjct 44830374 CATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 44830433
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
||| || || || || || |||| | |||| || | | || || | |||||
Sbjct 44830434 TTCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44830493
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
|| |||||||| || || ||||| | |||||| | ||| | || || || || ||
Sbjct 44830494 GCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAG 44830552
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
| || | || | |||| ||||| || || || | ||| ||||||||||||
Sbjct 44830553 AAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44830612
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| ||
Sbjct 44830613 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44830672
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
| ||| ||||| ||| || | ||||||||| ||||| ||||| ||||||||| ||
Sbjct 44830673 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44830732
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575
| ||| | ||| |||||||| | |||| || || || ||||| | | || |
Sbjct 44830733 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGA-A 44830791
Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635
|| || || || || || || ||| ||||| || || || || || || || ||||
Sbjct 44830792 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 44830851
Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695
| | ||| || || || || | || || || |||||||| || |||||| || | |
Sbjct 44830852 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAAGCGGCAAGGGTTTCCTCTCA 44830911
Query 93696 GTAACGGCTC 93705
| | ||||||
Sbjct 44830912 GCAGCGGCTC 44830921
Score = 125 bits (138), Expect = 8e-24
Identities = 372/567 (66%), Gaps = 9/567 (2%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149
||| ||||||| |||||||| || || | || || || | ||||| ||||| |
Sbjct 144506197 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 144506139
Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209
|| || | ||||||| ||||||||||||| ||||| |||||| ||||||||| |
Sbjct 144506138 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGA 144506079
Query 93210 aTATACCTTCCACGGCTGCAAATGC--CA--CAATACGTTCGGCAAAATTTGCGGAATTA 93265
| | | |||| | ||||| || || ||| |||||| || | | ||
Sbjct 144506078 AGGTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATGTCTTTG 144506019
Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325
| | ||||| || ||||| | || || ||||| | ||| || | ||||| ||
Sbjct 144506018 TTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATG 144505960
Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385
|| | || || | || | || | |||| || |||| || || | ||| |
Sbjct 144505959 GCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAAT--ATGTGTCAATAAGGAGATTA 144505902
Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445
| |||||||||| | || || || ||||||||||| || ||||| || | |||
Sbjct 144505901 TTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCT 144505842
Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505
|| ||||| ||||||||| |||| || |||| ||||||| | ||| ||||| ||
Sbjct 144505841 GTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACAT 144505782
Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565
||||| || ||||||| ||||| |||||||| | | | ||| || || |||
Sbjct 144505781 GCTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCC 144505722
Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625
|| | | | || || || || || || || | | | |||| || || | ||| ||
Sbjct 144505721 CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACT 144505662
Query 93626 TTTTTGTACATATCCCATATGTCTTGA 93652
|| || ||||| | ||| || || |||
Sbjct 144505661 TTCTTTTACATTTTCCAAATATCATGA 144505635
>seq1
Length=228908639
Score = 140 bits (154), Expect = 4e-28
Identities = 176/241 (73%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 93299 TTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCT 93358
||||| | ||||||| ||||| || | ||| || || | || | || | ||||||
Sbjct 140322429 TTCTTGACACAAGGT---GTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCT 140322485
Query 93359 CGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATT 93418
|||||| || || || | ||| ||||||||||||||| || ||||| ||||||
Sbjct 140322486 TTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATT 140322545
Query 93419 TGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACG 93478
||||| | |||||||| | ||||| || ||||| |||||||| ||||| ||| ||
Sbjct 140322546 TGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACC 140322605
Query 93479 AGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAA 93538
| |||||||| ||||| ||||| ||||||||| ||||||| | | | |||||||
Sbjct 140322606 AAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAA 140322665
Query 93539 T 93539
|
Sbjct 140322666 T 140322666
>seq39
Length=107640188
Score = 98.7 bits (108), Expect = 1e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202
||||| | || || | ||||||||||||||||||||| ||||| || |||||| |||
Sbjct 97368628 AATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCG 97368687
Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||||| || || |||||||| || ||||| || |||| ||||||
Sbjct 97368688 GAAAAGAAAATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 97368731
Score = 96.9 bits (106), Expect = 4e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414
|||| |||||| || || || | ||| ||||||||||||||| | || ||||| ||
Sbjct 97370970 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 97371029
Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474
||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| |||
Sbjct 97371030 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97371089
Query 93475 TAC 93477
||
Sbjct 97371090 CAC 97371092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556577420499640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |