Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq389 131 1e-25 seq728 123 2e-23 seq287 118 9e-22 seq377 114 1e-20 seq646 107 2e-18 seq773 95.1 1e-14 seq860 87.8 2e-12 >seq389 Length=121655618 Score = 131 bits (144), Expect = 1e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 27659452 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCA 27659393 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || |||| ||||||||||||||||||||||| || || || | Sbjct 27659392 GTGACACCATTGAGAATGTCAATGCGAAAATTCAAGACAAGGAGGGTATACCCCCTGACC 27659333 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| ||||||||| |||||||| | |||||| ||||| |||| || |||| Sbjct 27659332 AGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCGCATTCTCTCAGACTACA 27659273 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||| | ||||| Sbjct 27659272 ACATCCAGAAACAGCCCACC 27659253 >seq728 Length=90977943 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| || | ||| Sbjct 41396460 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCAAGCCCA 41396519 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | | || ||||| |||||||| |||||||||||||| ||||| | | Sbjct 41396520 CCGACACCATTTAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGTATCCCACCTTACC 41396579 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| |||||||| || |||| | | |||||| || ||| |||| | |||| Sbjct 41396580 AGCAGCATCTGATATTTGCTGGGAAACGGCTGGAGGATGGCCACACTCTCTCAGGCTACA 41396639 Query 22397 ACATTCAAAAAGAATCCACCATA 22419 |||| || ||||| |||||| || Sbjct 41396640 ACATCCAGAAAGAGTCCACCCTA 41396662 >seq287 Length=159110946 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || |||| || || | || || || || |||| || || || || ||| Sbjct 25710846 AGATGCAGATCTTTGCGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCCA 25710787 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || |||| |||||| |||||||||||| ||||||| || | Sbjct 25710786 GTGACACCACTGAGAATGTCAAGGCCGAAATTCGAGACAAGGAGGGCATTCCACTTGACC 25710727 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | |||||||| |||||||| ||||||||| | |||||| |||||| |||| || | || Sbjct 25710726 AGCAACGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTGCA 25710667 Query 22397 ACATTCAAAAAGAATCCA 22414 |||| || ||||| |||| Sbjct 25710666 ACATCCAGAAAGAGTCCA 25710649 >seq377 Length=146757320 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| ||||||||||| || ||||| || || || ||||| ||| |||| |||||| Sbjct 124616546 AAAATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATACTTGCGGGCAAA 124616605 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| |||| || |||||||| || ||||| |||||| | || Sbjct 124616606 CAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGCAC 124616665 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || |||| |||| || || Sbjct 124616666 CTGGTGCTGCGCCTGCGAGGTGG 124616688 >seq646 Length=133456746 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||| | || || | || || || || |||| ||||| |||| ||| Sbjct 115608453 AGATGCAGATCTTTATGAACACCCTCACGGGCAAGACCATCACCCTTGAGGTGGGGCCCA 115608394 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| || | || || | Sbjct 115608393 GTGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCTGCCTGACC 115608334 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| ||||||| ||||||||| | |||||| || || |||| || || | Sbjct 115608333 AGCAGTGTCTGATATTTGTGGGCAAACAGCTGGAGGATGGCCACAGTCTCTCAGACTAGA 115608274 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| || ||||| |||| | | || | || |||| |||| || || Sbjct 115608273 ACATCCAGAAAGAGTCCATCCTGCACCTGGTGCTGCGCCTGCGAGGTGG 115608225 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 124982253 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 124982194 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 124982193 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 124982134 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 124982133 GCAGAGGTTAATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 124982074 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || ||||| ||||| | || || || |||| ||| | || ||| Sbjct 124982073 CATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 124982025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || ||||| || |||| || || || || ||| Sbjct 124983164 ATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGT 124983105 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || ||||| ||||| || || || || || || Sbjct 124983104 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAG 124983045 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || |||||| | || ||| |||||| | || ||||||||| Sbjct 124983044 CAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGATTACAAC 124982985 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 124982984 ATCCAGAAAGAGTCTACC 124982967 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || ||||| || |||| || || || || ||| Sbjct 124982709 GATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAG 124982650 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 124982649 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 124982590 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || || ||| | |||||| |||||| | || || ||||| Sbjct 124982589 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 124982530 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 124982529 CATCCAGAAAGAGTCCACC 124982511 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || ||||| || |||| ||||| || || ||| Sbjct 124982937 GATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTTGAGGTCGAGCCCAG 124982878 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 124982877 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 124982818 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || || ||| | || ||| |||||| | || || ||||| Sbjct 124982817 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 124982758 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 124982757 CATCCAGAAAGAGTCCACC 124982739 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| || || || || ||| Sbjct 124982480 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGT 124982421 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||| || ||||||||||| || || || || || || Sbjct 124982420 GACACCATCGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 124982361 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||| | || ||| |||||| | || || |||||| Sbjct 124982360 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 124982301 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 124982300 ATCCAGAAAGAGTCTACC 124982283 >seq773 Length=81384781 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| || ||||| || || | || || | || |||| ||||| || || ||| Sbjct 38779905 AGATGTGGATCTTTGTGAAGACCCTCACAGGCCAGACCATCACCCTTGAGGTCGAGCCCA 38779846 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||| || || || ||||| ||||||||||||| | |||| || | ||| || | Sbjct 38779845 GTGATGCCACTGAGAATGTCAAAGCCAAAATTCAAGACAGGTAGGGCATCCTACCTGACC 38779786 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| ||||||| ||||||||| | ||||| || ||| ||| || |||| Sbjct 38779785 AGCAGTGTCTGATATTTGAGGGCAAACAGCTGAAGGATGGCCACACACTCTTAGACTACA 38779726 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 38779725 ACATCCAGAAAGAGTCCACC 38779706 >seq860 Length=57935654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| || || || ||||| |||||||||||||||||| | |||||| |||| Sbjct 18438977 GGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGC 18439036 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || |||| || |||||||| || |||| Sbjct 18439037 ACTCTCTCAGACTACAACATCCAGAAAG 18439064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419519745525715