Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq931 161 2e-34 >seq931 Length=156331669 Score = 161 bits (178), Expect = 2e-34 Identities = 415/622 (67%), Gaps = 24/622 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || |||||| ||||| ||||||||| || ||| ||||||| || Sbjct 44830876 ATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACC 44830817 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | |||||| ||||||||| |||| |||||| | ||| | ||| | | Sbjct 44830816 GAGGAGGTGGACCTGTCCAAGGACATTCGGCA--CTGGGAACCCCTGAAGCCCGAGGA-G 44830760 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | | |||| ||||| || || ||| |||||||| |||| Sbjct 44830759 AGATATTTTATATCCCATG--TTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATG 44830702 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | || ||| | || | || || ||| ||| || || ||||| ||||| Sbjct 44830701 AAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTA 44830644 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 |||||||| || ||||| || ||| | || ||||| |||| | || || | | Sbjct 44830643 TGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGA 44830587 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| |||||| |||| | || | | || ||||| ||||| || |||||||| Sbjct 44830586 CACTTACATCAAAGATCTCAAAGAAAGGGAATTTCTCTTCAATGCCATTGA-ACGATGCC 44830528 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 || ||||||||||||| || ||||| | |||||| | | || || || | Sbjct 44830527 TTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTA 44830468 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || || | |||||||| | || || || ||||||||||| || || | || || Sbjct 44830467 TGGTGAACATGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGC 44830408 Query 42755 CTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 || || |||||||||||| | | ||||||| || ||||| || || || ||||| Sbjct 44830407 ATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACT 44830348 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 || ||||| || ||||| | || | || ||||| ||| | ||||| | ||||| Sbjct 44830347 TATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTC---AAACACCT 44830291 Query 42875 CAGGCACAAGCCCTCGAAGGAG 42896 ||||| || ||| ||||| Sbjct 44830290 GGTACACAAACCATCGGAGGAG 44830269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943858637585360