Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=228908639 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| || |||||||| || ||||||||||| || | Sbjct 186547703 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 186547644 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| || ||||| ||||| ||||| || ||| | ||||| || || | || || | Sbjct 186547643 TGCCCCAAGCTGAGAACCAAGACCCAGACATCAAGGCGCATGTGAACTCCCTCGGGGAGA 186547584 Query 9981 ATCTAAAGACCCTACGGCT 9999 |||| |||||||| |||| Sbjct 186547583 ATCTGAAGACCCTCAGGCT 186547565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||||||||||||||| |||||||| || || ||||||| Sbjct 186545372 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 186545313 Query 10140 TAGAAGCATACATGACAATTAA 10161 ||||||| ||||||||||| || Sbjct 186545312 TAGAAGCCTACATGACAATGAA 186545291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552435529329440