Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 132 1e-25 seq646 125 2e-23 seq219 123 6e-23 seq235 120 7e-22 seq786 114 3e-20 seq773 114 3e-20 seq126 105 2e-17 seq698 93.3 1e-13 seq389 89.7 1e-12 >seq1 Length=228908639 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 172116177 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 172116118 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | || || || || |||||||| | ||| ||| | || Sbjct 172116117 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 172116058 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| | Sbjct 172116057 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGCC 172115998 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| |||||||| || || || || ||||| ||||||||| Sbjct 172115997 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATT 172115950 >seq646 Length=133456746 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | |||||||| || ||| Sbjct 124982974 TCTTTCTGGATGTTGTAATCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCAAAG 124983033 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| ||||| ||||| ||||| || || || || || Sbjct 124983034 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTC 124983093 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| ||||| ||||| || ||||||||||| ||| Sbjct 124983094 TCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACG 124983153 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 124983154 AAGATCTGCATT 124983165 >seq219 Length=165317712 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || | || ||||| | || || ||||| ||| Sbjct 57062660 TCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCATCTTCCAGCTGCTTGCCTGCAAAG 57062719 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| ||| | ||||| ||||||||||| ||||| || || ||||| ||| Sbjct 57062720 ATGAGCCTCTGCTGATCGTGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTT 57062779 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| |||||||| ||||| ||| Sbjct 57062780 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 57062839 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 57062840 AAGATCTGCAT 57062850 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 62366387 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 62366446 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || ||||| ||||||||||| ||||| || || ||||| ||| Sbjct 62366447 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTT 62366506 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 62366507 TCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACG 62366566 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 62366567 AAGATCTGCAT 62366577 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 62366615 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 62366674 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || ||||| ||||||||||||||||| || || ||||| ||| Sbjct 62366675 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTT 62366734 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 62366735 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 62366794 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 62366795 AAGATCTGCAT 62366805 Score = 111 bits (122), Expect = 4e-19 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 62366843 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 62366902 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || ||| || ||||| ||||||||||| || || ||||| Sbjct 62366903 ATGAGCCTCTGCTGG---TCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 62366959 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| ||||| || || || Sbjct 62366960 TTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTC 62367019 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 62367020 ACGAAGATCTGCATTTTG 62367037 Score = 107 bits (118), Expect = 5e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || |||| || ||||| || || ||||| ||| Sbjct 57062888 TCTTTCTGGATGTTGTAGTCAGAAAGACTGCGGCCATCTTCCCGCTGCTTGCCTGCAAAG 57062947 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATT-CCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||| || | | |||||| ||||||||||| |||||||| || || || || Sbjct 57062948 ATGAGCCTCTGCTGGTCA-CGGGGATTGCCTTCTTTATCTTGGATTTTGGCCTTGACATT 57063006 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| | || | || ||||| || ||||| |||| || || || || || || Sbjct 57063007 TTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGATCTTGCCAGTAAGGGTTTTCAC 57063066 Query 288462 GAATATCTGCATTATG 288477 ||| ||||||||| || Sbjct 57063067 GAAGATCTGCATTTTG 57063082 >seq235 Length=173266796 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||| | ||||| | Sbjct 115827920 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGAATCCTTTTGAATACTGTAGTCAGAC 115827861 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | ||| ||||| || |||||||| | || ||| | || Sbjct 115827860 AAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 115827801 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| | Sbjct 115827800 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAGCC 115827741 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||| | | ||||| || | ||| ||||||||| || Sbjct 115827740 TCGAGGGTGATGGTCTTCTCCATAAGAGTTTTCATGAAAATCTGCATTTTG 115827690 >seq786 Length=95888799 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || | ||||| || |||||||| ||||| ||| | | Sbjct 10327975 CCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGAC 10327916 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | ||| || || || |||||| | | || ||| | || Sbjct 10327915 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 10327856 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 10327855 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCAACC 10327796 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | ||| ||| | |||||||| || || || || ||||| ||||||||| || Sbjct 10327795 TTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 10327745 >seq773 Length=81384781 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || | |||| || || ||||| |||| ||||| | Sbjct 51769183 CCACCACGAAGTCTCAACACAAAATGAGGAGTAGACTCCTTTTGACTATTGTAGTCAGAC 51769242 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | || || || || |||||||| | ||| ||| | || Sbjct 51769243 AAAGTACATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 51769302 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| | Sbjct 51769303 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGCC 51769362 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| || || || || ||||| ||||||||| || Sbjct 51769363 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 51769413 >seq126 Length=135448346 Score = 105 bits (116), Expect = 2e-17 Identities = 143/201 (71%), Gaps = 10/201 (5%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 28264962 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 28265021 Query 288343 ATCAGACGCTGTTGA----------GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGC 288392 || || | ||| || | | ||| | ||||||||||||||||| || || Sbjct 28265022 ATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGCCTTCTTTATCCTGGATCTTGGC 28265081 Query 288393 TTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| ||||| || | || || | || ||||| || ||||| ||||| || ||||| Sbjct 28265082 CTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAG 28265141 Query 288453 AGTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| Sbjct 28265142 GGTCTTCACAAAGATCTGCAT 28265162 Score = 102 bits (112), Expect = 2e-16 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| |||||||| | | ||||| | ||||| | || || |||| ||| Sbjct 28265200 TCTTTCTGGATGTTATAGTCAGAATGAGTGCGGTCATCTTCCACCTGCTTGACTGCAAAG 28265259 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || ||| || ||||| ||||||||||| || || ||||| Sbjct 28265260 ATGAGCCTCTGCTGG---TCCGGGGTAATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 28265316 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || ||||| || | || ||||| | ||| || ||||| Sbjct 28265317 TTTTCGATGGTGTCCCTGGGCTCCACTTCAAGGGCAATGGTCTTGCTGGTAAGGGTCTTC 28265376 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 28265377 ACGAAGATCTGCATTTTG 28265394 >seq698 Length=97154659 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/189 (72%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| |||||||| || ||| | | ||||| | || || |||||||||| Sbjct 69931628 CTTTCTGGATTTTATAGTCAAAAAGAGTGTGGACATCTTCCAGCTGCTTGCCTGCGAAGA 69931569 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | || | ||| || | | ||||| |||||||||||||||| || | |||||| |||| Sbjct 69931568 TGAGCCTCTGCTG-GTCTGGGGGATGTCTTCTTTATCCTGGATCTT-GGTTTCACATTTT 69931511 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | | || || ||||| || || |||| ||||| || || || ||||| |||| Sbjct 69931510 CAGTGCTGTCACT---GTCTACCTCCAGGGTGACGGTCTTGCCAGTGAGGGTCTTCACGA 69931454 Query 288464 ATATCTGCA 288472 | ||||||| Sbjct 69931453 AGATCTGCA 69931445 >seq389 Length=121655618 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 288285 TTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT 288344 ||| ||||| || ||||| | ||| |||| || || || | ||||| | || || || Sbjct 27659262 TTTCTGGATGTTGTAGTCTGAGAGAATGCGGCCATCCTCCAGCTGTTTGCTGGCAAATAT 27659321 Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 ||||||||| || | || || || || || || || |||||||| || || || || Sbjct 27659322 CAGACGCTGCTGGTCAGGGGGTATACCCTCCTTGTCTTGAATTTTCGCATTGACATTCTC 27659381 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || | || || || || ||||| ||||| || || || ||||| || || Sbjct 27659382 AATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAA 27659441 Query 288465 TATCTGCAT 288473 |||||||| Sbjct 27659442 GATCTGCAT 27659450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179039080837058