Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq646 122 8e-23 seq168 113 4e-20 seq1 113 4e-20 seq773 104 2e-17 seq786 91.5 1e-13 seq219 82.4 7e-11 >seq646 Length=133456746 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || |||||||| || ||||| ||| || Sbjct 124982955 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGCCCATCTTC 124983014 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||||||||| |||||| | |||||| || ||||| ||||| ||||| || Sbjct 124983015 CAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTG 124983074 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | |||||| |||| ||| | || || Sbjct 124983075 GATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 124983134 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || |||||||| Sbjct 124983135 ACCAGTCAGAGTCTTCACGAAGATCTGCAT 124983164 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || ||||| || || ||||| ||| || Sbjct 124982271 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTC 124982330 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| || ||||||| | |||||| || ||||| ||||| |||||||| Sbjct 124982331 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 124982390 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | |||||| |||| ||| | || || Sbjct 124982391 GATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 124982450 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || |||||||| Sbjct 124982451 ACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982480 >seq168 Length=201391403 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 5653903 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 5653844 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| |||||| || ||||||||| ||| Sbjct 5653843 GACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 5653784 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| || || ||| | | ||| | || |||| || Sbjct 5653783 GGAATTCCTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCA 5653724 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 5653723 ACCTCGAGGGTGATGGTCTTTCCCGTAAGGGTTTTCACGAAAATCTGCAT 5653674 >seq1 Length=228908639 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 172116180 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 172116121 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| |||||| || ||||||||| ||| Sbjct 172116120 GACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 172116061 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| || Sbjct 172116060 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCA 172116001 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 172116000 GCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 172115951 >seq773 Length=81384781 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| ||||| |||||||| |||||| ||||||| || Sbjct 51769180 GCACCACCACGAAGTCTCAACACAAAATGAGGAGTAGACTCCTTTTGACTATTGTAGTCA 51769239 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || ||||| || ||||| |||||| || ||||||||| ||| Sbjct 51769240 GACAAAGTACATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 51769299 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| || Sbjct 51769300 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCA 51769359 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 51769360 GCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 51769409 >seq786 Length=95888799 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| ||||| | ||||||||||||||||||||||| | Sbjct 10327978 GCACCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCA 10327919 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || || || || ||||| ||||| || |||||||| ||| Sbjct 10327918 GACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGA 10327859 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || ||| || Sbjct 10327858 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGTTCA 10327799 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || ||| || || || || || ||||| || ||||||||||| Sbjct 10327798 ACCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10327749 >seq219 Length=165317712 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || | ||||| | Sbjct 62366363 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 62366422 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| |||||||| ||||| || || Sbjct 62366423 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 62366482 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | ||||| |||||| | ||| || || | || | Sbjct 62366483 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 62366542 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 62366543 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62366577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475258823586640