Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1 179 5e-40 seq728 127 3e-24 >seq1 Length=228908639 Score = 179 bits (198), Expect = 5e-40 Identities = 174/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||||||||||| || || || ||||| || |||||||| || Sbjct 165981838 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 165981897 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 165981898 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 165981957 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| || |||| || || |||| || | || | ||| | Sbjct 165981958 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 165982017 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 165982018 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 165982061 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||| || || ||||| |||||||| | || || || | ||| Sbjct 165979831 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 165979890 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || |||||||| || || || || || || Sbjct 165979891 TGAAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACA 165979950 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || | || | ||| ||||||| ||| Sbjct 165979951 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCCACCATGGTCTCACCAAAG 165980010 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | || || || ||||| || | | | ||| || || || ||||| |||| | Sbjct 165980011 ATGGCATCTGGCCGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCACAGCATCGATG 165980070 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||| ||||||||||| |||| || ||||| || ||| Sbjct 165980071 TCACCATAGAGTGCTTCCAACTCTGCAGACATTTCCTTTTCTCCT 165980115 Score = 113 bits (124), Expect = 7e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||||| || || | ||||| ||||||||| ||| || ||||| || | ||| ||| Sbjct 165983606 TCACCTTTGACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTAGTA 165983665 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || ||||| Sbjct 165983666 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGTT 165983725 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 165983726 GGTGGACTGTCAATCAAATGTGATCTGGCT 165983755 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| || | |||||||| || |||||| ||| ||| | || Sbjct 165982993 TCTTACCCCATGGCCCAGCCCATTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 165983052 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| ||| | |||||||||||| Sbjct 165983053 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 165983112 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | | | ||| |||||||||| ||||||| || || | Sbjct 165983113 AGGGATGAACTTTCTTCTTAGGAGTAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 165983172 Query 10301 CGCCTTACCTGA 10312 | |||||||| Sbjct 165983173 CTTTTTACCTGA 165983184 Score = 104 bits (114), Expect = 3e-17 Identities = 113/148 (76%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| |||| || || ||||| |||||||||||| ||| | Sbjct 165984668 CTTACGTGTTGAGCAGTTTTCTCCATAGAATCCTGTCCGGGTACAATCGCACTTATACTG 165984727 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || || ||||| ||||||||||| || Sbjct 165984728 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACATGGGTGGGAACAGCAAGGATT 165984787 Query 10960 GGCTGCAATTTAAAAGATAG--AATAAA 10985 ||||||| ||||| || || |||||| Sbjct 165984788 TGCTGCAA-TTAAAGGACAGCAAATAAA 165984814 >seq728 Length=90977943 Score = 127 bits (140), Expect = 3e-24 Identities = 179/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || ||||||| || || || || ||||| || ||||| || ||||||||| Sbjct 33098126 GTGGCCGTCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTAC 33098185 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 33098186 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 33098245 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| || ||||| | ||| | ||||| | || | || |||| ||| Sbjct 33098246 ATCATACTCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAA-GAAGCAGTCCAGGGTA 33098304 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| | | |||||||| || || ||||||||||| Sbjct 33098305 GAACTCCAACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTC 33098364 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 33098365 TCCTACAAG 33098373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723359703867400