Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq646 132 3e-26 seq389 132 3e-26 seq287 125 5e-24 seq728 100 2e-16 seq168 96.9 2e-15 seq219 91.5 1e-13 >seq646 Length=133456746 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||||| | ||| |||||||| ||||| ||||| || Sbjct 124982026 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 124982085 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || ||||| |||| | |||||||| | || Sbjct 124982086 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATTAACCTCTGCTGGTCAGGAGGG 124982145 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 124982146 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 124982203 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || || |||||||| ||||||||||| Sbjct 124982204 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 124982252 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | ||| |||| |||||||| ||||||||||| Sbjct 124982290 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAG 124982349 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | || |||||||| ||||| |||||| Sbjct 124982350 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTC 124982409 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || |||| ||| ||||| || || || || |||||||| Sbjct 124982410 TCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACG 124982469 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 124982470 AAGATCTGCAT 124982480 Score = 113 bits (124), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || || ||| | || |||| |||||||||||||| ||||| Sbjct 124982974 TCTTTCTGGATGTTGTAATCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCAAAG 124983033 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| ||||| || Sbjct 124983034 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTGAC--AT 124983091 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || |||| ||| ||||| || || || |||||||||| Sbjct 124983092 TCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCA 124983151 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 124983152 CGAAGATCTGCAT 124983164 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || || | |||| ||||||||||| || ||||| Sbjct 115608261 TCTTTCTGGATGTTCTAGTCTGAGAGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAAT 115608320 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| || | | ||||||||||| || || |||||| || Sbjct 115608321 ATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGAC--AT 115608378 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || | | || || | ||| ||||| || |||||||| || |||| Sbjct 115608379 TCTCAATGGTGTCACTGGGCCCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCA 115608438 Query 34969 CAAAGATCTGCAT 34981 |||||||||||| Sbjct 115608439 TAAAGATCTGCAT 115608451 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 124982500 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 124982559 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| ||||| || | | |||||||| | || | || |||||||| Sbjct 124982560 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 124982619 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || |||| ||| ||||| | Sbjct 124982620 ATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCT 124982677 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| ||||||||||| Sbjct 124982678 TACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982708 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 124982728 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 124982787 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| ||||| || | | |||||||| | || | || |||||||| Sbjct 124982788 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 124982847 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 124982848 ATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 124982905 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| ||||||||||| Sbjct 124982906 TACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982936 >seq389 Length=121655618 Score = 132 bits (146), Expect = 3e-26 Identities = 145/191 (76%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 34793 TTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT 34852 |||||| ||||| ||||| || || | || |||| ||||||||||| | ||||||||| Sbjct 27659262 TTTCTGGATGTTGTAGTCTGAGAGAATGCGGCCATCCTCCAGCTGTTTGCTGGCAAATAT 27659321 Query 34853 TAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGC 34912 || || |||||||| | || | ||||||||||| ||| ||| ||||| || | Sbjct 27659322 CAGACGCTGCTGGTCAGGGGGTATACCCTCCTTGTCTTGAATTTTCGCATTGAC--ATTC 27659379 Query 34913 T--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || |||||||| ||||||||| Sbjct 27659380 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACA 27659439 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 27659440 AAGATCTGCAT 27659450 >seq287 Length=159110946 Score = 125 bits (138), Expect = 5e-24 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||| || || | || |||| ||||||||||| || |||||| Sbjct 25710654 TCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAT 25710713 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTG-TTTGACGGA 34909 || || ||||||||||| | || | ||||||||||| | ||| ||| | ||||| | Sbjct 25710714 ATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTCGAAT-TTCGGCCTTGAC--A 25710770 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || | | |||| || ||| || |||| ||| ||||| || || ||||| |||||| Sbjct 25710771 TTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTC 25710830 Query 34968 ACAAAGATCTGCAT 34981 ||||||||||||| Sbjct 25710831 GCAAAGATCTGCAT 25710844 >seq728 Length=90977943 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||| | || || | | |||| |||||| |||| || |||||| Sbjct 41396652 TCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCATCCTCCAGCCGTTTCCCAGCAAAT 41396593 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||| | || | ||||||||||| ||| || |||||| || Sbjct 41396592 ATCAGATGCTGCTGGTAAGGTGGGATACCCTCCTTGTCCTGAATTTTGGCTTTGAC--AT 41396535 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || || || || || | ||| ||||| || |||||||| ||||||| Sbjct 41396534 TCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCA 41396475 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 41396474 CAAAGATCTGCAT 41396462 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||||||||| ||||| | || |||| |||| |||||| ||||| Sbjct 23980190 TCTTTCTGGATGTTATAGTCTGAAAGAGTACGGCCATCCTCCAACTGTTTGTTCACAAAT 23980249 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | | | ||| |||||||| ||||| |||||| | Sbjct 23980250 ATCAGATGCTGCTGGTCAGGTAGGATGCCCCCCTTGTCGTGGATCTTGGCTTTGACATTT 23980309 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | |||| | || || || | ||| |||||||| || ||||| ||||| ||| Sbjct 23980310 TCACTGGTGTCACTCGGCTGGACCTCAAGGGTGATGGTTTTGCCTGTGAGGGTCTTTACA 23980369 Query 34971 AAGATCTGCAT 34981 |||||||||| Sbjct 23980370 GAGATCTGCAT 23980380 >seq168 Length=201391403 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||| | ||||| ||||| || || || | |||| ||| Sbjct 28010468 ACCAGGTGCAGCGTGGACTCTTTCCGGATGTTGTAGTCTGAGAGAGTTTGGCCATCCTCC 28010409 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || |||| ||| || | |||||||| | || | ||||||||| | Sbjct 28010408 AGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGA-TACCTCCTTGTGTTGA 28010350 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| | || || || | || ||||| | Sbjct 28010349 ATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTTGGCTTGACCTCAAGAGTGATGGTCT 28010292 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||||||| |||||||||||||||||||| Sbjct 28010291 TGCCCGTGAGGGTCTTCACAAAGATCTGCAT 28010261 >seq219 Length=165317712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || |||||||| ||||| ||||| ||| Sbjct 62366351 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 62366410 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 62366411 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366470 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| || || | | || | |||| || ||| || Sbjct 62366471 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 62366530 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| || || || || |||||||| |||||||||||| Sbjct 62366531 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 62366578 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 62366615 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 62366674 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || || || ||||| || || | Sbjct 62366675 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTT 62366734 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 62366735 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 62366794 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 62366795 AAGATCTGCATA 62366806 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 62366843 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 62366902 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| || || | Sbjct 62366903 ATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTT 62366962 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || || ||||| Sbjct 62366963 TCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACG 62367022 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 62367023 AAGATCTGCATTTT 62367036 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | | |||| |||||||| || || ||||| Sbjct 57062660 TCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCATCTTCCAGCTGCTTGCCTGCAAAG 57062719 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || || || | || || || || ||||| || || | Sbjct 57062720 ATGAGCCTCTGCTGATCGTGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTT 57062779 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 57062780 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 57062839 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 57062840 AAGATCTGCATA 57062851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324472528068408