Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq931 365 5e-96 seq39 116 4e-21 seq377 107 2e-18 seq638 102 9e-17 >seq931 Length=156331669 Score = 365 bits (404), Expect = 5e-96 Identities = 652/940 (69%), Gaps = 20/940 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||| || | |||||||||||||| || || || || |||| ||| Sbjct 44829965 TTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTT--TTGGACTTAACACCACTCTCATC 44830022 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| | |||||||| ||||| |||| | ||| ||| Sbjct 44830023 CTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTC 44830077 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||| |||| |||||||| | | ||| | | || | || || | ||| | | Sbjct 44830078 TCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATA 44830137 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || ||||| | ||| ||| ||||| | | |||||||| || || | Sbjct 44830138 AGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGC 44830197 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908 || ||||| | || || || || |||||||||||||| | || || | ||||| | || Sbjct 44830198 TTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT-TGATAATTAT 44830256 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||| | || || || || || || ||||| |||||||| || ||||| Sbjct 44830257 TTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAA 44830316 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| |||| ||||| ||||| || || | |||||| ||||| || | |||||||| Sbjct 44830317 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 44830376 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | |||||| ||| || | ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 44830377 CGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 44830436 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 |||||| || || || || | ||| ||||| |||| || || | |||||| Sbjct 44830437 TACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCG 44830496 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| |||||||| || ||||| ||||| || || || | ||| | ||| | Sbjct 44830497 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGA--AGAGA 44830553 Query 19209 CATACGCTCATCTGT---ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 || | || ||| | |||||| | || | || || | | ||| |||||||| || Sbjct 44830554 AATTCCCT-TTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44830612 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| || ||||| || || || || || || || ||||| | |||||||| ||||| || Sbjct 44830613 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44830672 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 | | ||||| || |||||||||||||| ||||| |||||||| |||||||| || Sbjct 44830673 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44830732 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAA 19444 | | ||||| ||||||| | | || || | | || | | || ||| | || Sbjct 44830733 AACCAGAACATGGGATATAAAATATCTCTCCTC-GGGCTTCAGGGGTTCCCAGTGCCGAA 44830791 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 | || || || | || || || || ||||| || |||||||| || || ||||||| Sbjct 44830792 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 44830851 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | | ||| |||||| | || | || || || || ||||| Sbjct 44830852 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891 Score = 168 bits (186), Expect = 8e-37 Identities = 380/566 (67%), Gaps = 9/566 (2%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| | ||| |||| ||||| || || || || | |||||| |||||||| | Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 ||||||||||||||| ||| || | ||||||||| ||||| || ||||||||||| Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGT----CTTTCTCCATAACTAGCATCATTATT 19136 | | ||| | ||||| || | | | |||||||| || || || || Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATGTCTTTGTT 144506017 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 |||||| || ||||| | |||||||| || ||||| ||||| || || || | Sbjct 144506016 CCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATGGC 144505958 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 | | || ||| | | || | ||||||||| || || || || | | | | | Sbjct 144505957 ACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATATGTG--TCAATAAGGAGATTATT 144505900 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 ||||| |||| || ||||||||||| || || || || || || || | |||||| Sbjct 144505899 TATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTGT 144505840 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 ||||| ||||| | |||| ||| || || ||||||| | ||| ||||||| || Sbjct 144505839 AATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATGC 144505780 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CC 19435 ||| || || || | | ||| ||||||| | ||| || | | || | | || || Sbjct 144505779 TGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAG-GCTTCAGGGCTTCCC 144505721 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | | ||| || || || | || || || | | |||| |||||| ||||| ||| Sbjct 144505720 AGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 144505661 Query 19496 TTTTATACATGTTCCATATATCACGA 19521 | || ||||| ||||| |||||| || Sbjct 144505660 TCTTTTACATTTTCCAAATATCATGA 144505635 >seq39 Length=107640188 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||||||||||||| | || ||||||||||||| ||| | Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718 Query 19103 CAAC 19106 | || Sbjct 97368719 CTAC 97368722 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 97366488 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGACTTGACATCACTCCCATC 97366545 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 97366546 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 97366605 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| |||||||| || | ||| Sbjct 97366606 TCCATAAAGTCAAATGGGTTCTCTAC 97366631 >seq377 Length=146757320 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || ||||| || ||| Sbjct 103162977 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 103163036 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| | |||||||| || ||||| || Sbjct 103163037 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGCC 103163096 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 103163097 ACCACTCTTTCCCC 103163110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || || |||| Sbjct 103151143 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103151202 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 103151203 ATAAAATCAAAAGGATTTT 103151221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || || |||| Sbjct 103176272 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 103176213 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 103176212 ATAAAATCAAAAGGATTTT 103176194 >seq638 Length=135235416 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || || | Sbjct 3898777 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 3898718 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| ||||||||||| | | || | Sbjct 3898717 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 3898658 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || |||||||||| ||| || | ||| || || Sbjct 3898657 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 3898609 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| || || Sbjct 3895936 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATGGAC 3895877 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || |||||||| || ||||||||||| | |||| | ||| || Sbjct 3895876 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 3895817 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 3895816 TTTCTTATACCATA 3895803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561822749858040