Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq1 241 2e-58
seq235 109 7e-19
seq646 87.8 2e-12
seq860 86.0 8e-12
>seq1
Length=228908639
Score = 241 bits (266), Expect = 2e-58
Identities = 247/323 (76%), Gaps = 0/323 (0%)
Strand=Plus/Minus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| |||||| ||||| |||| ||||| ||| | || |||||||| |||||
Sbjct 139507610 GTTTCACAAAGCAGCTCAACCCCATTGATGGTGAACGGGATTCTGGGGGAGTCAGTAACT 139507551
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||||| ||||| || || |||||| || | |||||||| |||| | ||| ||
Sbjct 139507550 CTTCCCCTGGAGTTTCCTGCAGGAGAGAAGGTCGACTCCATCACTTGGCTTTGCAATGGA 139507491
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || | ||||| || | ||| || |||| || || | |||||| | || |||
Sbjct 139507490 ACATCTCTTGCCTTCATAGTACCCCATGAAACCAAAAGTCCAGAAATCCACATGACTAAT 139507431
Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117
|| |||| ||| |||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct 139507430 CCAAAACAGGGAAAGCGACTGAAGTTCACCCAGTCCTACTCCCTGCAACTCAGCAACCTG 139507371
Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177
||||||||||||| || || |||||||||| ||| ||| | ||||| | | || |
Sbjct 139507370 AAGATGGAAGACACAGGCTCTTACAGTGCCCAGATATCCACAAAGACCTCTGCAAAGCTG 139507311
Query 2178 TCCAGCTACACGCTGAGGATCTT 2200
||||| ||||| |||||||| ||
Sbjct 139507310 TCCAGTTACACTCTGAGGATATT 139507288
Score = 219 bits (242), Expect = 5e-52
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265
|||||| |||||| || || | |||||||||||| || | ||||||| ||| ||| |||
Sbjct 139502613 AACTGAGGAACATACAAGTTACCAATCACAGTCAGCTATTTCAGAATAGGACCTGTGAGC 139502554
Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325
|||||||||| || ||||| |||||| | ||||||| |||| |||| |||||||||||
Sbjct 139502553 TCCATCTGACTTGCTCTGTGGAGGATGCAGATGACAATGTCTCATTCAGATGGGAGGCCT 139502494
Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385
|||| || || ||| | | |||| |||||||| ||||||||||||||||| ||
Sbjct 139502493 TGGGAAACACACTTTCAAGTCAGCCAAACCTCACTGTCTCCTGGGACCCCAGGATTTCCA 139502434
Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445
|||| ||| ||||||| ||||| || || || ||||| || ||| | || ||| | ||||
Sbjct 139502433 GTGAACAGGACTACACCTGCATAGCAGAGAATGCTGTCAGTAATTTATCCTTCTCTGTCT 139502374
Query 2446 CGGCCCAGAAGCTGTG 2461
| ||||||||||| ||
Sbjct 139502373 CTGCCCAGAAGCTTTG 139502358
Score = 215 bits (238), Expect = 6e-51
Identities = 242/324 (75%), Gaps = 0/324 (0%)
Strand=Plus/Plus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| |||||| ||||| |||| ||||||||||| || |||||||| |||||
Sbjct 141380910 GTTTCACAAAGCAGCTCAACCCCATTGATGGTGAATGGGGTTCTGGGGGAGTCAGTAACT 141380969
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||||| ||||| ||||| |||| |||| ||| |||||| |||| | ||| ||
Sbjct 141380970 CTTCCCCTGGAGTTTCCTGCGGGAGAGAGGATCCAGTTCATCACTTGGCTGTGCAATGGA 141381029
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || | ||||| | | |||| ||| | ||| || || | ||| || | || ||
Sbjct 141381030 ACATCTTTTGCCTTCCTAGAACCCTAGGAAGGCAAAAGTCCAAAAATCTACGTGACTCAT 141381089
Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117
|| ||| | |||| ||| | |||||| ||||||||||||| || || ||||||||
Sbjct 141381090 CCAAAATGGCAAAAGCAACTGAGCTTCACCCAGTCCTACTCCCCTCAGCTCAGCAACCTG 141381149
Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177
||||||||| |||| || | |||||||||| ||| || | |||||| | | || |
Sbjct 141381150 GAGATGGAAAACACAGGCTTTTACAGTGCCCAGATAGCCACAGAGACCTCTGCAAAGCTG 141381209
Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201
| ||| ||||| |||||||| |||
Sbjct 141381210 TTCAGTTACACTCTGAGGATATTC 141381233
Score = 104 bits (114), Expect = 3e-17
Identities = 74/85 (87%), Gaps = 4/85 (5%)
Strand=Plus/Minus
Query 2661 CACCTCAGACCAAAACATGCTAAACATAACACACCAGCA----GACTGACTCTTTGATAA 2716
||| |||| ||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 139497723 CACTTCAGGCCAAAACATGCTAAAGATAACACACCAGCACATTGACTCTCTCTTTGATAA 139497664
Query 2717 ATAAGCTAATGGAATTATGGTTGAC 2741
||||| ||||||||||||||||||
Sbjct 139497663 CTAAGCAAATGGAATTATGGTTGAC 139497639
>seq235
Length=173266796
Score = 109 bits (120), Expect = 7e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | ||||||||||| ||||||||||||||| || || | ||||
Sbjct 32035908 CCCTCATGCTGCACATGGCATGTGTATCTCTCCTCTTCTCCAGAAGGCACCACCACAGCT 32035967
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || |||||||| ||||| | || || | |||| || || |||
Sbjct 32035968 GCCCACTTCTGGAAGGTTCCATCTCCTGCTGGCCTGGTCTCCACAAGCTCGGTGTCCTGA 32036027
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
|||| || || || || || | ||| || | | | || || || || || || ||||
Sbjct 32036028 GTTTGGTCCTCGCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 32036087
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 32036088 GCCCAGCACC 32036097
Score = 100 bits (110), Expect = 4e-16
Identities = 129/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 14520 GCAGCTTCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGT 14579
|| || |||||||| | | || || || || ||||| |||| ||| |||||||| ||
Sbjct 30592267 GCCGCCTCCCACTTGCGCTGGGTGATCTGAGCCGCCATGTCTGCCGCGGTCCAAGAGCGC 30592208
Query 14580 AGATCTTCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGA 14639
|| || || || || ||| ||||| || ||||||||||||| |||| || || ||
Sbjct 30592207 AGGTCCTCGTTCAGGGTGATGTAATCCTTGCCGTCGTAAGCGTCCTGCAGGTACCCGCGG 30592148
Query 14640 ATGAAACTTCCATTTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGACC 14697
| ||| | || | || || || ||||||||||||| ||| || ||||||||||
Sbjct 30592147 AGGAAGCGCCCGTCCGGCCCCACTTCGCAGCCATACATTCTCTGGATGGTGTGAGACC 30592090
Score = 93.3 bits (102), Expect = 5e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| || || || || | ||||||||||| ||||||||||||||| || || | ||||
Sbjct 32028132 CCCTCGTGCTGCACATGGCATGTGTATCTTTGCTCTTCTCCAGAAGGCACCACCACAGCT 32028191
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || || || || || || | || || | |||| || || |||
Sbjct 32028192 GCCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACAAGCTCGGTGTCCTGA 32028251
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
|||| || || || || || | ||| || | | | || || || || || || ||||
Sbjct 32028252 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 32028311
Query 14358 GCCCAGCACCGTAAAGTAGTCTCGTG 14383
|||||||||| | ||| | ||| ||
Sbjct 32028312 GCCCAGCACCTCAGAGTGGCCTCATG 32028337
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 14520 GCAGCTTCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGT 14579
|| || |||||||| | || || || || || ||||| || | ||| ||||| || ||
Sbjct 30533053 GCCGCCTCCCACTTGCGCTTGGTGATCTGAGCTGCCATGTCCGCCGCGGTCCAGGAGCGC 30532994
Query 14580 AGATCTTCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGA 14639
|| || || || ||| || ||||| || |||||||| |||| ||| ||||| || ||
Sbjct 30532993 AGGTCCTCGTTCAGAGCGATGTAATCCTTGCCGTCGTAGGCGTGCTGTTCATACCCGCGG 30532934
Query 14640 ATGAAACTTCCATTTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGA 14695
| ||| | || | || || || ||||||||||| ||| || ||||||||
Sbjct 30532933 AGGAAGCGCCCGTCGGGCCCCACGTCGCAGCCATACATCACCTGCATGGTGTGAGA 30532878
>seq646
Length=133456746
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 186279 AATTTTCTTAAAAGATATAAAGGCCCATCGGAACACTGGGTCGGTCTTCGAAGACAATCC 186338
||||| || |||||||| |||||||| || || || ||| | || ||| ||||| ||||
Sbjct 9506353 AATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAATCA 9506412
Query 186339 TCTAACCACACTTGGAAATGGATAGACGAGACGGAGCATAATAACA 186384
|| | |||| ||||||||||| |||| | | ||| |||||||||
Sbjct 9506413 TCCCATCACATTTGGAAATGGACAGACAACATGGAATATAATAACA 9506458
>seq860
Length=57935654
Score = 86.0 bits (94), Expect = 8e-12
Identities = 134/188 (71%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 177663 AATCTAACCTACTCTACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAA 177722
|| || |||| ||| ||||||||||| |||||| ||| |||||||| || || ||
Sbjct 41940645 AACCTGACCTGCTCCACAAATGACACTGGAATCTCCATCCGTTGGTTCTTCAAAAACCAG 41940586
Query 177723 AATATATCATCATCACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGAC 177782
| | | | || ||| ||| || |||||| || || | | | |||||||| ||| ||
Sbjct 41940585 AGTCTCCCGTCCTCAGAGAGGATGAAGCTGTCCCAGGGCAACACCACCCTCAGCATAAAC 41940526
Query 177783 CCGGTC--GAGAGAGGAT-TTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATGT 177839
|| ||| ||| |||||| ||||||| || |||||||||| ||||| ||| |
Sbjct 41940525 CCTGTCAAGAGGGAGGATGCTGGGACG-TATTGGTGTGAGGTCTTCAACCCAATCAGTAA 41940467
Query 177840 AAACCAAA 177847
|||||||
Sbjct 41940466 GAACCAAA 41940459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628962965645560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |