Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1 241 2e-58 seq235 109 7e-19 seq646 87.8 2e-12 seq860 86.0 8e-12 >seq1 Length=228908639 Score = 241 bits (266), Expect = 2e-58 Identities = 247/323 (76%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||| ||| | || |||||||| ||||| Sbjct 139507610 GTTTCACAAAGCAGCTCAACCCCATTGATGGTGAACGGGATTCTGGGGGAGTCAGTAACT 139507551 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| || || |||||| || | |||||||| |||| | ||| || Sbjct 139507550 CTTCCCCTGGAGTTTCCTGCAGGAGAGAAGGTCGACTCCATCACTTGGCTTTGCAATGGA 139507491 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| || | ||| || |||| || || | |||||| | || ||| Sbjct 139507490 ACATCTCTTGCCTTCATAGTACCCCATGAAACCAAAAGTCCAGAAATCCACATGACTAAT 139507431 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || |||| ||| |||||||| || ||||| |||||||||||||| ||||| |||||||| Sbjct 139507430 CCAAAACAGGGAAAGCGACTGAAGTTCACCCAGTCCTACTCCCTGCAACTCAGCAACCTG 139507371 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 ||||||||||||| || || |||||||||| ||| ||| | ||||| | | || | Sbjct 139507370 AAGATGGAAGACACAGGCTCTTACAGTGCCCAGATATCCACAAAGACCTCTGCAAAGCTG 139507311 Query 2178 TCCAGCTACACGCTGAGGATCTT 2200 ||||| ||||| |||||||| || Sbjct 139507310 TCCAGTTACACTCTGAGGATATT 139507288 Score = 219 bits (242), Expect = 5e-52 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265 |||||| |||||| || || | |||||||||||| || | ||||||| ||| ||| ||| Sbjct 139502613 AACTGAGGAACATACAAGTTACCAATCACAGTCAGCTATTTCAGAATAGGACCTGTGAGC 139502554 Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325 |||||||||| || ||||| |||||| | ||||||| |||| |||| ||||||||||| Sbjct 139502553 TCCATCTGACTTGCTCTGTGGAGGATGCAGATGACAATGTCTCATTCAGATGGGAGGCCT 139502494 Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 |||| || || ||| | | |||| |||||||| ||||||||||||||||| || Sbjct 139502493 TGGGAAACACACTTTCAAGTCAGCCAAACCTCACTGTCTCCTGGGACCCCAGGATTTCCA 139502434 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| ||| ||||||| ||||| || || || ||||| || ||| | || ||| | |||| Sbjct 139502433 GTGAACAGGACTACACCTGCATAGCAGAGAATGCTGTCAGTAATTTATCCTTCTCTGTCT 139502374 Query 2446 CGGCCCAGAAGCTGTG 2461 | ||||||||||| || Sbjct 139502373 CTGCCCAGAAGCTTTG 139502358 Score = 215 bits (238), Expect = 6e-51 Identities = 242/324 (75%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||||||||| || |||||||| ||||| Sbjct 141380910 GTTTCACAAAGCAGCTCAACCCCATTGATGGTGAATGGGGTTCTGGGGGAGTCAGTAACT 141380969 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| ||||| |||| |||| ||| |||||| |||| | ||| || Sbjct 141380970 CTTCCCCTGGAGTTTCCTGCGGGAGAGAGGATCCAGTTCATCACTTGGCTGTGCAATGGA 141381029 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| | | |||| ||| | ||| || || | ||| || | || || Sbjct 141381030 ACATCTTTTGCCTTCCTAGAACCCTAGGAAGGCAAAAGTCCAAAAATCTACGTGACTCAT 141381089 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || ||| | |||| ||| | |||||| ||||||||||||| || || |||||||| Sbjct 141381090 CCAAAATGGCAAAAGCAACTGAGCTTCACCCAGTCCTACTCCCCTCAGCTCAGCAACCTG 141381149 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 ||||||||| |||| || | |||||||||| ||| || | |||||| | | || | Sbjct 141381150 GAGATGGAAAACACAGGCTTTTACAGTGCCCAGATAGCCACAGAGACCTCTGCAAAGCTG 141381209 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 | ||| ||||| |||||||| ||| Sbjct 141381210 TTCAGTTACACTCTGAGGATATTC 141381233 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 2661 CACCTCAGACCAAAACATGCTAAACATAACACACCAGCA----GACTGACTCTTTGATAA 2716 ||| |||| ||||||||||||||| |||||||||||||| |||| ||||||||||| Sbjct 139497723 CACTTCAGGCCAAAACATGCTAAAGATAACACACCAGCACATTGACTCTCTCTTTGATAA 139497664 Query 2717 ATAAGCTAATGGAATTATGGTTGAC 2741 ||||| |||||||||||||||||| Sbjct 139497663 CTAAGCAAATGGAATTATGGTTGAC 139497639 >seq235 Length=173266796 Score = 109 bits (120), Expect = 7e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||||||||||||||| || || | |||| Sbjct 32035908 CCCTCATGCTGCACATGGCATGTGTATCTCTCCTCTTCTCCAGAAGGCACCACCACAGCT 32035967 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||||||| ||||| | || || | |||| || || ||| Sbjct 32035968 GCCCACTTCTGGAAGGTTCCATCTCCTGCTGGCCTGGTCTCCACAAGCTCGGTGTCCTGA 32036027 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || || || || || | ||| || | | | || || || || || || |||| Sbjct 32036028 GTTTGGTCCTCGCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 32036087 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 32036088 GCCCAGCACC 32036097 Score = 100 bits (110), Expect = 4e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 14520 GCAGCTTCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGT 14579 || || |||||||| | | || || || || ||||| |||| ||| |||||||| || Sbjct 30592267 GCCGCCTCCCACTTGCGCTGGGTGATCTGAGCCGCCATGTCTGCCGCGGTCCAAGAGCGC 30592208 Query 14580 AGATCTTCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGA 14639 || || || || || ||| ||||| || ||||||||||||| |||| || || || Sbjct 30592207 AGGTCCTCGTTCAGGGTGATGTAATCCTTGCCGTCGTAAGCGTCCTGCAGGTACCCGCGG 30592148 Query 14640 ATGAAACTTCCATTTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGACC 14697 | ||| | || | || || || ||||||||||||| ||| || |||||||||| Sbjct 30592147 AGGAAGCGCCCGTCCGGCCCCACTTCGCAGCCATACATTCTCTGGATGGTGTGAGACC 30592090 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || || || || || | ||||||||||| ||||||||||||||| || || | |||| Sbjct 32028132 CCCTCGTGCTGCACATGGCATGTGTATCTTTGCTCTTCTCCAGAAGGCACCACCACAGCT 32028191 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || || || || || || | || || | |||| || || ||| Sbjct 32028192 GCCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACAAGCTCGGTGTCCTGA 32028251 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || || || || || | ||| || | | | || || || || || || |||| Sbjct 32028252 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 32028311 Query 14358 GCCCAGCACCGTAAAGTAGTCTCGTG 14383 |||||||||| | ||| | ||| || Sbjct 32028312 GCCCAGCACCTCAGAGTGGCCTCATG 32028337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 14520 GCAGCTTCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGT 14579 || || |||||||| | || || || || || ||||| || | ||| ||||| || || Sbjct 30533053 GCCGCCTCCCACTTGCGCTTGGTGATCTGAGCTGCCATGTCCGCCGCGGTCCAGGAGCGC 30532994 Query 14580 AGATCTTCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGA 14639 || || || || ||| || ||||| || |||||||| |||| ||| ||||| || || Sbjct 30532993 AGGTCCTCGTTCAGAGCGATGTAATCCTTGCCGTCGTAGGCGTGCTGTTCATACCCGCGG 30532934 Query 14640 ATGAAACTTCCATTTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGA 14695 | ||| | || | || || || ||||||||||| ||| || |||||||| Sbjct 30532933 AGGAAGCGCCCGTCGGGCCCCACGTCGCAGCCATACATCACCTGCATGGTGTGAGA 30532878 >seq646 Length=133456746 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 186279 AATTTTCTTAAAAGATATAAAGGCCCATCGGAACACTGGGTCGGTCTTCGAAGACAATCC 186338 ||||| || |||||||| |||||||| || || || ||| | || ||| ||||| |||| Sbjct 9506353 AATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAATCA 9506412 Query 186339 TCTAACCACACTTGGAAATGGATAGACGAGACGGAGCATAATAACA 186384 || | |||| ||||||||||| |||| | | ||| ||||||||| Sbjct 9506413 TCCCATCACATTTGGAAATGGACAGACAACATGGAATATAATAACA 9506458 >seq860 Length=57935654 Score = 86.0 bits (94), Expect = 8e-12 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 177663 AATCTAACCTACTCTACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAA 177722 || || |||| ||| ||||||||||| |||||| ||| |||||||| || || || Sbjct 41940645 AACCTGACCTGCTCCACAAATGACACTGGAATCTCCATCCGTTGGTTCTTCAAAAACCAG 41940586 Query 177723 AATATATCATCATCACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGAC 177782 | | | | || ||| ||| || |||||| || || | | | |||||||| ||| || Sbjct 41940585 AGTCTCCCGTCCTCAGAGAGGATGAAGCTGTCCCAGGGCAACACCACCCTCAGCATAAAC 41940526 Query 177783 CCGGTC--GAGAGAGGAT-TTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATGT 177839 || ||| ||| |||||| ||||||| || |||||||||| ||||| ||| | Sbjct 41940525 CCTGTCAAGAGGGAGGATGCTGGGACG-TATTGGTGTGAGGTCTTCAACCCAATCAGTAA 41940467 Query 177840 AAACCAAA 177847 ||||||| Sbjct 41940466 GAACCAAA 41940459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628962965645560