Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq931 246 4e-60 seq1 141 1e-28 seq39 111 2e-19 seq377 107 2e-18 >seq931 Length=156331669 Score = 246 bits (272), Expect = 4e-60 Identities = 517/762 (68%), Gaps = 14/762 (2%) Strand=Plus/Plus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 |||| ||| | ||||| || || |||| || || || || || ||||||| ||| Sbjct 44830014 ACTCTCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGT 44830068 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGATA 36993 || ||||| ||| |||| |||||||| | | || | | | | ||| | | Sbjct 44830069 GAAATATTCTCCGTAAAGTCAAATGGGCTC--TCTACTCCGAAAACCTTGCTAAAACCCA 44830126 Query 36994 ATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTA 37053 |||| || ||| || || || ||||| || ||||||| |||||| | || | Sbjct 44830127 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 44830186 Query 37054 TACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCAT 37113 | ||||| || || || || | || || || ||| || |||||| ||||||| Sbjct 44830187 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 44830246 Query 37114 CTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAAT 37172 ||| ||| | | || | || || | | ||| | | | | ||| |||| Sbjct 44830247 TGATAATTATTTCTCTCACTTTCTCCTCC-GATGGTTTGTGTACCAGGTGTTTGAACATC 44830305 Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||||||||| |||||||| |||||||| || || | |||||| ||||| || Sbjct 44830306 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44830365 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 | || ||||| |||| ||| || | ||| ||||| | ||||||||| ||||||||| Sbjct 44830366 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 44830425 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || || ||||| ||||| || || ||||||| | || ||| | || | | || Sbjct 44830426 AAGATGCCTTCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCC 44830485 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||| | |||||||||||| || ||||| || ||| |||| || Sbjct 44830486 CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCA 44830544 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || |||||||| | |||||| |||| | || ||||| ||||| || | ||||||| Sbjct 44830545 TTGAAGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATAC 44830604 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 |||||||| || || ||||| || || || || || ||||| ||||| | ||||| | | Sbjct 44830605 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG-T 44830663 Query 37533 AAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 ||| ||||| | ||| | || | || |||||||| ||||| |||||||| || Sbjct 44830664 AATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGC 44830723 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||||||| | ||||||| |||||||| ||| || || Sbjct 44830724 TGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTC 44830765 Score = 141 bits (156), Expect = 1e-28 Identities = 312/460 (68%), Gaps = 11/460 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || | Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||| ||| || | ||| ||||| ||||||||| ||||||||||| Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAG--ACGTGTACCGAAAGTTGAA---CTATAAT 37350 | | ||| | ||||| ||| || | || || | | | || || | | Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATGTCTTTGTT 144506017 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | || |||| |||| ||||||| || ||||| || | |||||||| | Sbjct 144506016 CCCAA-TCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGCA-TCGTTTCAATGG 144505959 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | | |||||||| | |||||| ||||| | |||| || ||||| || | | ||| Sbjct 144505958 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATAT--GTGTCAATAAGGAGATTAT 144505901 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||||||| | || ||||| ||||| || || || ||||| || || | ||| | Sbjct 144505900 TTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTG 144505841 Query 37531 ATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 |||| ||||| || | || ||| | | |||||||||| | ||||||||||| Sbjct 144505840 -TAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACAT 144505782 Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTT 37629 ||||| |||||||| |||| || |||||||| ||||| Sbjct 144505781 GCTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTT 144505742 >seq1 Length=228908639 Score = 141 bits (156), Expect = 1e-28 Identities = 168/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459 ||||||||| | || |||||||| | |||||| |||| |||| ||||| ||||| Sbjct 140322443 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAAT 140322502 Query 37460 TAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA 37519 || | ||||||||||||||| || | ||||| || || || || || |||| ||||| Sbjct 140322503 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 140322562 Query 37520 CCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTA 37578 | ||||| | |||| ||||| || | ||| | || | ||||||||||| |||| Sbjct 140322563 GCGGGCTTCTG-TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTA 140322621 Query 37579 TCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 | |||||||| |||||||||||||| |||||| |||||||| Sbjct 140322622 TGCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140322666 >seq39 Length=107640188 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||||||||| || | || ||||| | |||| ||| || Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | |||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 97368720 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 97368721 ACAACACGT 97368729 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 97366533 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 97366591 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 97366592 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 97366625 >seq377 Length=146757320 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 103162975 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 103163034 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || ||||| | Sbjct 103163035 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 103163094 Query 37318 CTAC 37321 | || Sbjct 103163095 CCAC 103163098 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCC 36880 |||||||||||||| |||| || || || |||| | | || || ||||||| | Sbjct 103151078 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTG-TGGTTTCTGC-CATAACTGC 103151135 Query 36881 CATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATAT 36940 | ||||| ||| ||||||| | || || |||||||| |||||||||| || || Sbjct 103151136 AAAACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAAT 103151195 Query 36941 ATTTTCCATAAAATCAAATGGATT 36964 ||||||||||||||||| ||||| Sbjct 103151196 GTTTTCCATAAAATCAAAAGGATT 103151219 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCC 36880 |||||||||||||| |||| || || || |||| | | || || ||||||| | Sbjct 103176337 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTG-TGGTTTCTGC-CATAACTGC 103176280 Query 36881 CATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATAT 36940 | ||||| ||| ||||||| | || || |||||||| |||||||||| || || Sbjct 103176279 AAAACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAAT 103176220 Query 36941 ATTTTCCATAAAATCAAATGGATT 36964 ||||||||||||||||| ||||| Sbjct 103176219 GTTTTCCATAAAATCAAAAGGATT 103176196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592015377384440