Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq219 118 8e-22 seq389 89.7 4e-13 seq126 87.8 1e-12 >seq219 Length=165317712 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | ||| | | |||| |||| ||| Sbjct 62366375 TGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 62366434 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || ||||| || ||||||||||||||||| || || Sbjct 62366435 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGGATCTTG 62366494 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | ||||| || ||||||| || |||||||| Sbjct 62366495 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTC 62366554 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 62366555 AGGGTCTTCACGAAGATCTGCAT 62366577 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || ||||| || || || || || ||||| || | Sbjct 57062624 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 57062683 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| |||||| | || Sbjct 57062684 AGAGTACCGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGTGGGGG 57062743 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||||||||| || || || ||| |||| | |||||| | |||||| Sbjct 57062744 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 57062803 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | || || || || |||||||| Sbjct 57062804 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 57062850 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || ||||| || || || || || ||||| || | Sbjct 62366807 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366866 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| || ||||| ||| Sbjct 62366867 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 62366926 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || ||| |||| | |||||| | ||||| Sbjct 62366927 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 62366986 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || |||||||| | ||||| || || |||||||| Sbjct 62366987 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 62367033 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | ||| ||||| | ||||| || || ||||| || | Sbjct 57062852 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCTACTCTTTCTGGATGTTGTAGTCAGAA 57062911 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | | | | | |||| ||| ||||| |||||||| || | | ||| || || | ||| Sbjct 57062912 AGACTGCGGCCATCTTCCCGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACGGGGA 57062971 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||||| ||||| || ||| |||| | |||| || | |||||| Sbjct 57062972 TTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACT 57063031 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| | ||||| || | ||||| || || |||||||| Sbjct 57063032 TCAAGGGTGATGATCTTGCCAGTAAGGGTTTTCACGAAGATCTGCAT 57063078 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || ||||| || || || || || ||||| || | Sbjct 62366579 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366638 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| || ||||| || Sbjct 62366639 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366698 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| || || || || ||| |||| | |||||| | |||||| Sbjct 62366699 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 62366758 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| || | || || || || |||||||| Sbjct 62366759 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 62366805 >seq389 Length=121655618 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 101281 TTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATAT 101340 ||| || || ||||| || | || | | | | |||| |||| || || | |||||||| Sbjct 27659262 TTTCTGGATGTTGTAGTCTGAGAGAATGCGGCCATCCTCCAGCTGTTTGCTGGCAAATAT 27659321 Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || |||||| || || || || || || || || ||||||||||| || ||| | || Sbjct 27659322 CAGACGCTGCTGGTCAGGGGGTATACCCTCCTTGTCTTGAATTTTCGCATTGACATTCTC 27659381 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||| | || || ||||| |||| || ||||| || | || || ||||| Sbjct 27659382 AATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAA 27659441 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 27659442 GATCTGCAT 27659450 >seq126 Length=135448346 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/213 (69%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | ||| | | |||| |||| ||| Sbjct 28264950 TGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 28265009 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGC----------GGAATGCCTTCTTTATC 101376 || |||||||| || | | ||| || ||||| || ||||||||||||| Sbjct 28265010 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGCCTTCTTTATC 28265069 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 || || || || ||| |||| | |||||| | |||||||| || |||| || Sbjct 28265070 CTGGATCTTGGCCTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 28265129 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || || ||||| |||||||| Sbjct 28265130 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 28265162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396081780403827