Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq860 196 9e-45
seq931 122 2e-22
seq1 93.3 8e-14
seq638 91.5 3e-13
>seq860
Length=57935654
Score = 196 bits (216), Expect = 9e-45
Identities = 189/243 (78%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||||||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 12562558 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 12562499
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | |||||| | ||||| || ||||| || | ||||||| ||||||
Sbjct 12562498 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 12562439
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 12562438 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 12562379
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| ||
Sbjct 12562378 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 12562319
Query 241625 GAC 241627
|||
Sbjct 12562318 GAC 12562316
Score = 145 bits (160), Expect = 1e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||| | ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 18141187 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 18141246
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | | |||||| |||||||||||| ||||| |||| |||||| |||||
Sbjct 18141247 TCCGTGTTCTGACTCTTGAGGGTCTTCACTTTCTCTTCCAGGCGCGAGATGCGCTCCAGC 18141306
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||||
Sbjct 18141307 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 18141366
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 18141367 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 18141399
Score = 89.7 bits (98), Expect = 1e-12
Identities = 88/115 (77%), Gaps = 8/115 (7%)
Strand=Plus/Minus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985
|||||||||| ||||||||| | ||||| || | | |||||| | ||||| |||||||
Sbjct 12562521 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGT 12562462
Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
| || | ||||||| | | |||||||| ||||||||||| ||||||||
Sbjct 12562461 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 12562407
>seq931
Length=156331669
Score = 122 bits (134), Expect = 2e-22
Identities = 457/708 (65%), Gaps = 14/708 (2%)
Strand=Plus/Plus
Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032
|||| ||||||| ||| || ||| ||||| || ||||| ||| ||||| ||||
Sbjct 44830154 ACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCT 44830213
Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092
||||| || || | |||||||| || || | | || | | || ||
Sbjct 44830214 CGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTTTCTCCT 44830273
Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152
| || ||||||| |||||| ||| | | || ||| ||||| || | ||| || |
Sbjct 44830274 CCGATGGTTTGTGTACCAGGTGTTTGA---ACATCAAGCAAGCAAAATCACAGTGTAAAC 44830330
Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212
| || || | ||| || || | ||||| || ||| |||||||| || | | |
Sbjct 44830331 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCT 44830390
Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272
|||||||||| || | || ||||| ||||| ||||||||||| || ||||| ||||| |
Sbjct 44830391 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGG 44830450
Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGTCT 48331
| | || || | | ||| | ||||| |||||| | ||| ||||| |||
Sbjct 44830451 CTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAG-GCCCAATCT 44830509
Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCT 48391
||||||||||||| || |||||||| || ||||| |||||| || | | |
Sbjct 44830510 GCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAG-AAATTCCCTTTCTTT 44830567
Query 48392 GCG-TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTC 48447
| | || | || || | | || || | ||||| ||||| || | || ||
Sbjct 44830568 GAGATCTTTGATGTAAGTGTCAATAAGGAGACT---ATACATTTCAGAATGTATGTTTTC 44830624
Query 48448 TATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAA 48507
|| || || ||||| || ||||| | ||| || | ||| ||| | | ||
Sbjct 44830625 CATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCTAAA 44830684
Query 48508 TCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATG 48567
|| ||||| || ||| ||||| ||||| ||||| || |||||||| | || |||||
Sbjct 44830685 TCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATG 44830744
Query 48568 TTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAG 48627
| |||| | ||| | | | | || | | |||| | | | ||| ||| |||
Sbjct 44830745 GGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGTCCTTGGACAG 44830804
Query 48628 GTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675
|||||| || || ||||||||||| || || || || |||||
Sbjct 44830805 GTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44830852
>seq1
Length=228908639
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 59556565 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 59556624
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 59556625 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 59556684
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 59556685 ATGGGGGAC 59556693
>seq638
Length=135235416
Score = 91.5 bits (100), Expect = 3e-13
Identities = 84/104 (81%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| || || |||||||||||||||||| |||||| ||||||||||| |||
Sbjct 3886887 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 3886828
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGG 213630
||| || || | || ||||| ||||||||||| || ||||
Sbjct 3886827 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGG 3886785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931058754602240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |