Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq931 143 5e-29 seq39 87.8 3e-12 >seq931 Length=156331669 Score = 143 bits (158), Expect = 5e-29 Identities = 409/614 (67%), Gaps = 30/614 (5%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| | || ||||||| |||| ||| | || Sbjct 44830864 GATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGAC 44830805 Query 25534 CTGGCCAAGGACATGGACGGC--TGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCT 25589 ||| |||||||||| |||| ||| | | || | || || ||| ||||| | Sbjct 44830804 CTGTCCAAGGACATT--CGGCACTGGGAACCCCTGAAGCCCGAGGAGAGAT--ATTTTAT 44830749 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 | || ||| ||||||||||| |||||| ||||| || || ||| || || Sbjct 44830748 ATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGA 44830689 Query 25650 GAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 | |||| | | ||| ||| ||| || ||| |||||||| || ||||| || Sbjct 44830688 GCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATT 44830631 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACA 25764 ||||| ||||| | || ||||| ||||| | || || || || ||||| | | Sbjct 44830630 GCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATCAAA 44830574 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || || || || || || || |||||| || | || || | |||||| | Sbjct 44830573 GATCTCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAGAAG 44830515 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGG 25881 ||||| |||||| || ||||| ||| |||| ||||| | ||| || | Sbjct 44830514 AAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAACAT 44830458 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 | |||||||| ||||| || || |||||||| || ||||| ||||| | || ||| Sbjct 44830457 GTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTC 44830398 Query 25942 TGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAG 26000 ||||||||| | | | ||||| ||||| || || |||||||| || || || ||||| Sbjct 44830397 TGGCTCAAG-AAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAG 44830339 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA 26060 || |||||| | ||| | |||||||| ||| || | | || ||| || | ||||| Sbjct 44830338 AGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCA---AACACCTGGTACACAA 44830282 Query 26061 ACCTTCTCAAGAGA 26074 ||| || | |||| Sbjct 44830281 ACCATCGGAGGAGA 44830268 >seq39 Length=107640188 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| ||||| || || |||||| |||||| | || |||||| Sbjct 97368722 GTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGG 97368663 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| |||||||| || ||||| || || || || ||||| || Sbjct 97368662 CTCAAG-AAACGAGGACTGATGCCCGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 97368604 Query 26004 CGAGG 26008 |||| Sbjct 97368603 TGAGG 97368599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928372122491840