Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq389 309 3e-79 seq168 165 9e-36 seq885 109 6e-19 seq744 87.8 2e-12 >seq389 Length=121655618 Score = 309 bits (342), Expect = 3e-79 Identities = 670/993 (67%), Gaps = 17/993 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| || ||| || |||| ||| |||| ||| || | |||||| || |||| || ||| Sbjct 58324518 TGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTA 58324459 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| || | || ||||||| || ||| || | ||||| | | Sbjct 58324458 TTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAATG 58324402 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | || || || ||||| |||||||| |||| || || | || ||| Sbjct 58324401 CACACTGAGCGCACATGGACTCCATTGCAGGGCGGGTAGGGAGCACCCTTGGAAACATCA 58324342 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || |||||||| || || || Sbjct 58324341 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCATAC 58324282 Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 || | | ||| | || |||||| | | || || | || | ||||||||| | Sbjct 58324281 TTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTTTGGATGGTGGCCCAGA 58324224 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 | | || || |||||||| ||||| | | ||| ||||| |||| | |||| | Sbjct 58324223 GATACTCATCAGGGCTGTATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCAT 58324164 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | | || || | || || || | || || ||||| || ||||| || || | Sbjct 58324163 TCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAAAA 58324104 Query 160465 TCGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 ||| | | || ||| || | |||| | || ||||| | || | ||| | Sbjct 58324103 GAGGTGTTTCGAGTGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCAT 58324047 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 | || | | | | |||||||||||||| | || || | |||||| | ||||| | Sbjct 58324046 TAACGACCTCATACCGCTTCTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTT 58323987 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | || |||| | || | | | || |||| | |||| || |||||||| || || | Sbjct 58323986 CCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 58323927 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 ||||| || |||| || | ||||||| ||||||||| || || |||| | | | Sbjct 58323926 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 58323867 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 | ||| ||||||| || | || ||||| || |||||||| || || || || || ||| Sbjct 58323866 GATCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 58323807 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG-- 160819 | | | |||||||||||||| ||| ||||| || |||| |||| ||| | ||| Sbjct 58323806 CCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTG-CAGCT 58323748 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 ||| | | | || | ||| |||||| || | |||||| | ||||||||| || Sbjct 58323747 AAATAGGA-ATCCTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 58323689 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||||||||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || || Sbjct 58323688 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 58323629 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 ||| |||||||| | ||| || ||| |||| | | || || || ||||||| Sbjct 58323628 TATTGGAAACTCCGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGAT 58323569 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| || ||| || | |||||||| ||||| Sbjct 58323568 GAAAGAAGAACAGTCACTGGTCATGTTTATATA 58323536 >seq168 Length=201391403 Score = 165 bits (182), Expect = 9e-36 Identities = 219/304 (72%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 168169 TTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCT 168228 |||| || ||||| || | || || || |||||||| |||||| | || ||||| |||| Sbjct 113845658 TTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGACACATGTAACACCCTTCATCCT 113845599 Query 168229 CCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCA 168288 ||| |||| ||||||| || || | ||||||||| |||| |||| ||| || ||||| | Sbjct 113845598 CCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAGTCCCAGCTGGGTAATGTTTA 113845539 Query 168289 CACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGT 168348 || ||||| | ||| || | || || || |||||||||||||||||| |||||| Sbjct 113845538 TCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTTCTCGCTGAAGGTGACCATGT 113845479 Query 168349 TCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCT 168408 | || ||||| || || | |||||||| || || || || | || | | | | Sbjct 113845478 TTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATGAGGGCTTCCTGGGCATTTT 113845419 Query 168409 GCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGA 168468 |||| || ||| | | ||||| || |||| |||| | |||| ||||| || || || | Sbjct 113845418 GCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCTCTCTTTCATCCTGGGTCACCA 113845359 Query 168469 CCTG 168472 | || Sbjct 113845358 CTTG 113845355 >seq885 Length=63231202 Score = 109 bits (120), Expect = 6e-19 Identities = 236/347 (68%), Gaps = 11/347 (3%) Strand=Plus/Plus Query 160608 TTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTT 160667 || |||| | |||| || | |||||| || || | ||||| || ||| || | | | Sbjct 18623366 TTGAGCTTCCTGACAATTT-TAGGTTGGTTTTAATAGGAAAATCCATACTACAAACATGT 18623424 Query 160668 ATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCTCATGCAATTAATATCTG 160725 || | ||||||||| | || |||| |||||| |||||||||||| || | || | Sbjct 18623425 ATTAAGTACTTCCAGTCTGCACTCACT--GTGCAGAGGTCCCTCATGCAGTTGAGGTCAG 18623482 Query 160726 CCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGT 160785 || | || || ||||| | || || || | |||| | | || ||||||||||| || Sbjct 18623483 CCAGAACCCGACTCCACAAGGCATAAACCAGACTCTCCAACTGACAGGCCACAAAGATGT 18623542 Query 160786 TATCGAAACACGACACGATTCCCACCA---CCGCCAGAAAGAACATCTTATCCGCCTTTC 160842 || ||| | ||| | || |||| || | || | |||| | |||| | ||| Sbjct 18623543 TACTGAA--ATGACCCAATGCCCATCACTGCAGCTAAAAAGGA-ATCTGCTGATTTTTTT 18623599 Query 160843 GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGA 160902 |||||| || | |||||| | ||||||||| |||||||| || | ||| || | Sbjct 18623600 TGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCTCTCCAGAGCCTGTCAA 18623659 Query 160903 ACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949 ||| || || |||| ||| | || ||||| || ||||| |||||| Sbjct 18623660 GCATTTCAATTTTATAATGAACCAGTATAGAATATGCTATTGGAAAC 18623706 >seq744 Length=80890724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 195/290 (67%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || ||||| | || ||| || | Sbjct 38056939 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAATTCAAGTCCCCAGC 38056883 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | |||||||| | || ||| | || ||| || | || |||| || || Sbjct 38056882 CCCATAAACGCAGACAGCCCGCTGGTGGATTCCAGAGCAGGGAGCATAAGGAGCACCCTT 38056823 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | | ||| || || | ||||||||| || | |||||| || | |||||| || Sbjct 38056822 ATCGATGTCTCCCTCATGACCCTGCCACTTGACCAGCCTGGCAATAGAAGTCATGTCTGA 38056763 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | ||||||| ||| |||||| | || || | | ||| ||| ||||| ||| Sbjct 38056762 GATGTCGTACTTGGGATGGTTGGGAACAGAGCCAGGCATCCACCGTGCA--CGCTGAAGG 38056705 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 38056704 GTGGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTTACCCATTCAAT 38056655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576925460364360