Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq931 134 2e-26
seq1 91.5 2e-13
>seq931
Length=156331669
Score = 134 bits (148), Expect = 2e-26
Identities = 297/443 (67%), Gaps = 9/443 (2%)
Strand=Plus/Plus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
|| || ||||||||| ||||||||| ||||||||| || | ||| || ||||||
Sbjct 44830306 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44830365
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
| || ||||| |||| ||| || ||||| ||||||||||| ||| || |||||||
Sbjct 44830366 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 44830425
Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333
|| || || || || ||| ||||| |||| | |||| || | | | |||
Sbjct 44830426 AAGATGCCTTCTACTGCA-GCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTC 44830484
Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393
| ||||| ||||| ||| | | | ||| || || | || || ||
Sbjct 44830485 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCAT-CGTTCAATGGC 44830543
Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453
||| || | | || |||||||| |||||| || |||||||| || | | | |||
Sbjct 44830544 ATTGAAGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 44830603
Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513
|||||||||||||||| ||||||| || || || || | ||| || | | || || |
Sbjct 44830604 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 44830663
Query 18514 ATATTGA---ATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570
| ||| || | ||| ||||| || |||||||| ||||| ||||| || |||
Sbjct 44830664 AATCTGAACTATTTGGCT---AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACT 44830720
Query 18571 AGATGCGAAAAATGCCAAAACAT 18593
| ||| || || ||| |||||
Sbjct 44830721 TGCTGCAAAGAAAACCAGAACAT 44830743
>seq1
Length=228908639
Score = 91.5 bits (100), Expect = 2e-13
Identities = 133/185 (72%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470
||||||||||||||||||| |||||||| || | | | |||||||||||||||| ||
Sbjct 140322472 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 140322531
Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGC 18527
||||||| || || || || ||| || | | || || | | |||| || | ||
Sbjct 140322532 TTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 140322591
Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587
| ||||| || ||||| || ||||| ||||| || ||| | ||| || || ||||
Sbjct 140322592 T---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 140322648
Query 18588 AAACA 18592
||||
Sbjct 140322649 GAACA 140322653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731499559487600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |