Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq931 134 2e-26 seq1 91.5 2e-13 >seq931 Length=156331669 Score = 134 bits (148), Expect = 2e-26 Identities = 297/443 (67%), Gaps = 9/443 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || ||||||||| ||||||||| ||||||||| || | ||| || |||||| Sbjct 44830306 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44830365 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| |||| ||| || ||||| ||||||||||| ||| || ||||||| Sbjct 44830366 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 44830425 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 || || || || || ||| ||||| |||| | |||| || | | | ||| Sbjct 44830426 AAGATGCCTTCTACTGCA-GCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTC 44830484 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | ||||| ||||| ||| | | | ||| || || | || || || Sbjct 44830485 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCAT-CGTTCAATGGC 44830543 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| || | | || |||||||| |||||| || |||||||| || | | | ||| Sbjct 44830544 ATTGAAGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 44830603 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||||||||| ||||||| || || || || | ||| || | | || || | Sbjct 44830604 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 44830663 Query 18514 ATATTGA---ATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 | ||| || | ||| ||||| || |||||||| ||||| ||||| || ||| Sbjct 44830664 AATCTGAACTATTTGGCT---AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACT 44830720 Query 18571 AGATGCGAAAAATGCCAAAACAT 18593 | ||| || || ||| ||||| Sbjct 44830721 TGCTGCAAAGAAAACCAGAACAT 44830743 >seq1 Length=228908639 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||||||||||||||| |||||||| || | | | |||||||||||||||| || Sbjct 140322472 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 140322531 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGC 18527 ||||||| || || || || ||| || | | || || | | |||| || | || Sbjct 140322532 TTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 140322591 Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587 | ||||| || ||||| || ||||| ||||| || ||| | ||| || || |||| Sbjct 140322592 T---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 140322648 Query 18588 AAACA 18592 |||| Sbjct 140322649 GAACA 140322653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731499559487600