Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq168 140 6e-28 seq1 131 3e-25 seq773 122 2e-22 seq786 109 1e-18 seq235 109 1e-18 seq885 95.1 2e-14 seq219 95.1 2e-14 seq848 84.2 4e-11 >seq168 Length=201391403 Score = 140 bits (154), Expect = 6e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 5653910 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 5653851 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| || || |||||||| || | |||||| || Sbjct 5653850 GTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTG 5653791 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| ||||| || |||||||| ||| ||||| || Sbjct 5653790 ATCAGGAGGAATTCCTTCCTTATCCTGTATCTTGGCCTTTACATTTTCTATCGTATCCGA 5653731 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 5653730 GGGTTCAACCTCGAGGGTGATGGTCTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 5653671 >seq1 Length=228908639 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 172116187 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 172116128 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| || || |||||||| || | |||||| || Sbjct 172116127 GTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTG 172116068 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 172116067 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 172116008 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 172116007 GGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 172115948 >seq773 Length=81384781 Score = 122 bits (134), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || ||||| ||||| ||| || | |||| Sbjct 51769173 TTTCTTAGCACCACCACGAAGTCTCAACACAAAATGAGGAGTAGACTCCTTTTGACTATT 51769232 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| || || |||||||| || | |||||| || Sbjct 51769233 GTAGTCAGACAAAGTACATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTG 51769292 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 51769293 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 51769352 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 51769353 GGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 51769412 >seq786 Length=95888799 Score = 109 bits (120), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | |||| || || ||||| | ||||| |||||| |||||| Sbjct 10327985 TTTCTTAGCACCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATT 10327926 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || | || |||| | | | || |||| ||| || |||||||| || ||| || || Sbjct 10327925 GTAGCCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTG 10327866 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| | Sbjct 10327865 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAA 10327806 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || | || || | || || || || | ||||| | ||| ||||||||||| Sbjct 10327805 TGGTTCAACCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 10327746 >seq235 Length=173266796 Score = 109 bits (120), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| || || |||| | Sbjct 115827930 TTTCTTATCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGAATCCTTTTGAATACT 115827871 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || |||||||| || | ||| || || Sbjct 115827870 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTG 115827811 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| | Sbjct 115827810 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAA 115827751 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || | | | ||||| ||||| ||||||||||| Sbjct 115827750 GGGTTCAGCCTCGAGGGTGATGGTCTTCTCCATAAGAGTTTTCATGAAAATCTGCATTTT 115827691 >seq885 Length=63231202 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| || Sbjct 17717395 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 17717336 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || | |||||| || | ||| | || Sbjct 17717335 GTAGTCAGACAAAGCACATACATCCTCCAGTTGCTTGCTAGCAAAGATCAGTCTTTACTG 17717276 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||||||| ||||| || | || |||| ||| ||| || ||||| Sbjct 17717275 ATCAGGAGGAATTCCTTACTTATCCTGGGTCTTGGCCTTTATATTTTCTATCGTTTCTGA 17717216 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 17717215 GGGTTCAGCCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 17717156 >seq219 Length=165317712 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || |||| | | |||| |||| ||| || |||||||| || | ||| Sbjct 121763107 AATGTTGTAGTCAGACAAAGCACATCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 121763166 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 | | ||||| || |||||||| |||||||| || || ||||||||| | | || Sbjct 121763167 TTACTCGTCAGAAGGAATTCCTTCCTTATCTTGGATGTTGGCTTTTACATT--TCCTTGT 121763224 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| | | ||| || || ||| | |||| ||| | | || ||| | ||||| ||||| Sbjct 121763225 ATCCAAGGGTTCAACCTCAAGACTGATGGCTTTCTCCATAAAGGTTGTTATGAAAATCTG 121763284 Query 172067 CATTTT 172072 |||||| Sbjct 121763285 CATTTT 121763290 >seq848 Length=78004504 Score = 84.2 bits (92), Expect = 4e-11 Identities = 142/195 (73%), Gaps = 17/195 (9%) Strand=Plus/Plus Query 126994 Aatatgataaacctatatattatacttactatgatttatatagaaatatga-atgatata 127052 ||||||||| | | |||||||||| || ||| | |||| |||||| || ||||| Sbjct 58227338 AATATGATATAAC-ATATATTATA--TAATATA--TAATATG---ATATGATATAATATA 58227389 Query 127053 att-tacaattatgataata-ATATTGTTAAAACATATATGGATATTTTATTATCTCAAA 127110 ||| || ||| || ||||| ||||| |||||||||| || |||||||||||| | | | Sbjct 58227390 ATTATATAAT-ATATTAATATATATTAATAAAACATATTTGCATATTTTATTATATTATA 58227448 Query 127111 TACAATTTTTATCAACTATAAATATTaaaaaaaTATGTAATACATATTCGAATAGAATGG 127170 || ||| | || | ||| | ||| || | ||||| ||||| | ||| ||| || Sbjct 58227449 TATAATATACATTA--TATTATTATAAATATAATATATAATATACATT---ATATTATTA 58227503 Query 127171 TACATATATTATATA 127185 || ||||| |||||| Sbjct 58227504 TAAATATAATATATA 58227518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904675387603800