Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq931 111 5e-19 seq786 87.8 5e-12 >seq931 Length=156331669 Score = 111 bits (122), Expect = 5e-19 Identities = 368/565 (65%), Gaps = 7/565 (1%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| || || || | || || |||||||||||||| || | | | | Sbjct 44830891 TTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCT 44830832 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || | ||||| ||| ||||||||| |||| Sbjct 44830831 TCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAACCCCTG 44830772 Query 133196 ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | || || | | ||||||| || ||| || | | || ||||| || |||||||| Sbjct 44830771 AAGCCCGAGGAGAGATATTTTATATCCCATG-TTCTGGTTTTCTTTGCAGCAAGTGATGG 44830713 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || || ||||||||| | || |||| | |||||| | | |||||||| Sbjct 44830712 CATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACAGAAGCCCG 44830653 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || ||||| | || ||||| |||||||| || |||||| | ||| | || Sbjct 44830652 CTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCT 44830593 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT-AGCG 133433 ||||| ||||||||||||||| | | | | | || ||||| |||||| | || Sbjct 44830592 TATTGACACTTACATCAAAGATCTCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAACG 44830533 Query 133434 AATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG 133493 | | |||||| | || ||||| | || ||||| | ||||| |||||| | Sbjct 44830532 A--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGG 44830475 Query 133494 CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTG 133553 | | | || | | | | || || || |||| |||||| ||||| || || |||| Sbjct 44830474 CTACCTATGGTGAACATGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTT 44830415 Query 133554 CGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCT 133612 | || ||| || || || ||||| || || || || | ||||| || ||||| Sbjct 44830414 C-TTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCC 44830356 Query 133613 AACGAACTTATTTCAAGGGACGAGG 133637 || ||||||||| || || |||| Sbjct 44830355 AATGAACTTATTAGCAGAGATGAGG 44830331 >seq786 Length=95888799 Score = 87.8 bits (96), Expect = 5e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| || || Sbjct 7522869 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCGTG 7522810 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 7522809 GAAAAAGAACTCAGTGGGTGTGAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 7522750 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| | ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 7522749 CTCAGGCCCGTAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 7522690 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||| || || ||||||||||| || | | | ||| | ||| |||| Sbjct 7522689 AATCCGCTTGCCCTCGACGTTCTGCTGGCCGACGACAGCAATGACCTGGGAAA 7522637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471049885681607