Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq39 95.1 1e-14 seq287 84.2 2e-11 >seq39 Length=107640188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 97058616 TCCAGCATATGGGGACCAACATGTGATGGCCTCGATCGGATTGTTGAGCGCTGTGACCTG 97058675 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | |||||||||||||||||||||| || | Sbjct 97058676 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGC 97058734 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAG 21296 ||| | || || || || ||||||| | |||| | ||||||| || |||| Sbjct 97058735 TGCTGCCTCTACGTTCAATGGCTTCCAGAGGCCAACGATCTACTATGTGATGTCAG 97058790 >seq287 Length=159110946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 198/298 (66%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || ||| |||| ||| | ||| |||| | |||| | | || | Sbjct 128396963 ATGCCTTCTATGTCATGGACCTTAGAGACATTCTAAAGACACATCTAAGATAGTTAAAAG 128397022 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGAGTCCTCA 20324 || | ||| | |||| || ||||| || || || | || ||| |||| | ||| Sbjct 128397023 CTCTTCCTCATGTCACCCCCTTTTATGCAGTCAATT---ATAATGACAGCAGAGCCATCA 128397079 Query 20325 ---AGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGT 20381 |||| || |||||| | || || ||||||||||| || ||| || || || | Sbjct 128397080 TGAAGACTCTTGCTGCCATCGGGACAGGATTTGACTGTGCTAGCAAGGCTGAAATACAAT 128397139 Query 20382 TACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGC 20441 | |||| | ||||| | | | |||| ||| | | | ||| ||| ||||||| || Sbjct 128397140 TGGTGCAGATTCTGGAGATGCCCCCAGAGAGGTTTATCTATGCAAATTCTTGTAAACAAA 128397199 Query 20442 CTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGA 20499 || || || | ||| | || | | |||||| | |||||| ||||| || ||| Sbjct 128397200 TGTCTCAAATTAAGTACACTGCCAATAATGGAGTCCAGATGATGATTTTTGGTAATGA 128397257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463309707438480