Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq646 107 1e-18 seq389 98.7 7e-16 seq168 89.7 3e-13 seq219 86.0 4e-12 seq287 84.2 1e-11 >seq646 Length=133456746 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 124982710 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 124982769 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || ||||| ||||| ||||| | |||||| || | || Sbjct 124982770 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 124982829 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| || | |||||| || | || || Sbjct 124982830 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 124982888 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| || | || || || ||||||||||| Sbjct 124982889 CTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982936 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | ||||| || |||||| |||||| || |||||||| || | Sbjct 124982024 CACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 124982083 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || |||||| | || |||| ||||| || ||||| || || | |||||| || | | Sbjct 124982084 ACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATTAACCTCTGCTGGTCAGGAG 124982143 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || || | |||| || | |||||| || | ||| Sbjct 124982144 GGATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 124982202 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || | || || || ||||||||||| Sbjct 124982203 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 124982252 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || || || |||||| || |||||||| || || Sbjct 124982254 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 124982313 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || ||||||||||| ||||| | |||||| || | || Sbjct 124982314 AGGGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 124982373 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | || | || | |||||| || | || || Sbjct 124982374 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGAC 124982432 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 124982433 CTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982480 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 124982482 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 124982541 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || ||||| ||||| ||||| | |||||| || | || Sbjct 124982542 AGGGTGCGCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 124982601 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| || | |||||| || | || || Sbjct 124982602 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 124982660 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 124982661 CTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982708 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || || || |||||| || ||||||||||| || Sbjct 124982938 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAC 124982997 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| |||||||| ||||| |||| | |||||| || | || Sbjct 124982998 AGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 124983057 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || || | |||| || | |||||| || | || || Sbjct 124983058 ATGCCTTCCTTATCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 124983116 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || ||||| || | || || || ||||||||||| || Sbjct 124983117 CTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACGAAGATCTGCATTGT 124983167 >seq389 Length=121655618 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || | ||| || ||| || |||||||| || ||||| |||| | || || Sbjct 27659241 CACCAGGTGCGGGGTGGGCTGTTTCTGGATGTTGTAGTCTGAGAGAATGCGGCCATCCTC 27659300 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| | |||||| |||| ||||||||| || | || | ||| || ||||| Sbjct 27659301 CAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGGGGTATACCCTCCTTGTCTTG 27659360 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||||| || | ||| ||| |||||| || | || || |||| ||||| || | Sbjct 27659361 AATTTTCGCATTGA-CATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 27659419 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 27659420 TGCCCGTGAGGGTCTTCACAAAGATCTGCAT 27659450 >seq168 Length=201391403 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||| || || | ||||| || || ||| |||||| | |||||||| || ||| Sbjct 28010486 CCACCTTACAGGCGCAGCACCAGGTGCAGCGTGGACTCTTTCCGGATGTTGTAGTCTGAG 28010427 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || |||| ||||| || |||| |||| | ||||||| || | || Sbjct 28010426 AGAGTTTGGCCATCCTCCAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGG 28010367 Query 33643 ACACCTTCTT-TGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||| ||| ||| | |||||| ||| | ||| ||| |||||| |||| | | Sbjct 28010366 ATACCTCCTTGTGTTG--AATTTTGGCTTTGA-CATTCTCAATGGTGTCACTTGGCTTGA 28010310 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || |||||||||||||| Sbjct 28010309 CCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 28010261 >seq219 Length=165317712 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | |||| || || || ||| || || |||||||| || || Sbjct 62366806 ACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 62366865 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 62366866 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 62366925 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| |||| || | |||||| || | |||| Sbjct 62366926 AATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 62366984 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | ||||| || ||||||||||| Sbjct 62366985 CCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 62367033 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | |||| || || || ||| || || |||||||| || || Sbjct 57062623 ACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 57062682 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || |||| || || || ||||| || | | ||||||||| || || Sbjct 57062683 AAGAGTACCGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGTGGGG 57062742 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || || || ||| |||| || | |||||| || | |||| Sbjct 57062743 GATGCCTTCTTTATCTTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 57062801 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 57062802 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 57062851 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | |||| || || || ||| || || |||||||| || || Sbjct 62366578 ACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 62366637 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 62366638 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGG 62366697 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || || || ||| |||| || | |||||| || | |||| Sbjct 62366698 GATGCCTTCTTTATCCTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 62366756 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 62366757 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 62366806 >seq287 Length=159110946 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||| | || ||||| ||||| | || |||| ||||| || ||||| Sbjct 25710653 CTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 25710712 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||| ||||| || | || | || || ||||| ||||| | | | |||| Sbjct 25710713 TATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTCGAATTT-CGGCCTTGACAT 25710771 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| |||||| || | || || || | ||||| || || ||||| | || || Sbjct 25710772 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCG 25710831 Query 33737 CAAAGATCTGCAT 33749 ||||||||||||| Sbjct 25710832 CAAAGATCTGCAT 25710844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328540908477120