Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq860 104 7e-19 seq638 104 7e-19 seq235 102 3e-18 seq698 98.7 3e-17 seq646 98.7 3e-17 >seq860 Length=57935654 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1183300 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1183241 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1183240 CCGGGTTTCGGC 1183229 >seq638 Length=135235416 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 58710563 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 58710504 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 58710503 CCGGGTTTCGGC 58710492 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 58701704 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 58701645 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 58701644 CCGGGTTTCGGC 58701633 >seq235 Length=173266796 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 29437886 TGGCCGAAATAGCTCAGATGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 29437827 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 29437826 TCCCGGGTTTCGGC 29437813 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 29453456 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 29453397 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 29453396 CCGGGTTT 29453389 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 29614549 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29614490 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29614489 CCGGGTTTCGGC 29614478 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827 |||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 29392145 GCTGAAATAGCTCAGTTGGGAGAGGGTTAGACTGAAGATCTTAAAGTTCCCTGGTTCAAC 29392086 Query 2828 CCCGGGCTTCAGC 2840 | ||| |||||| Sbjct 29392085 ACAGGGTTTCAGC 29392073 Score = 86.0 bits (94), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||| |||||||||||||||||||||||||||||||| |||||| | || || Sbjct 81087275 AAATAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCTCTGGTTTGATCCTGG 81087216 Query 2833 GCTTCAG 2839 | ||||| Sbjct 81087215 GTTTCAG 81087209 Score = 82.4 bits (90), Expect = 2e-12 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 || ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 29419953 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTT 29419899 >seq698 Length=97154659 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 77364988 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 77364929 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 77364928 CCGGGTTTCGGC 77364917 >seq646 Length=133456746 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 124999738 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 124999679 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 124999678 CCGGGTTTCGGC 124999667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15842542544595