Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq168 279 6e-70 seq848 154 2e-32 seq1 145 9e-30 >seq168 Length=201391403 Score = 279 bits (308), Expect = 6e-70 Identities = 255/322 (79%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||| |||| || || ||| | |||||||| Sbjct 113845355 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGTACACACCTGCTTCCTTAAAATGCTCT 113845414 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| | || ||||| || |||||||||| || | | ||| Sbjct 113845415 CTGCAAAATGCCCAGGAAGCCCTCATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 113845474 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| ||||||||| ||||||| || ||||||||| Sbjct 113845475 GAAAACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGAC 113845534 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||| Sbjct 113845535 AAGATAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACC 113845594 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| | |||||| ||||| Sbjct 113845595 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCA 113845654 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || ||||||||||||| ||| Sbjct 113845655 GGAACGGCCTGCCTCACCGTCT 113845676 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | || || | ||||||| ||||| | | ||||||| Sbjct 47156762 GTACTCCCTGGTGTTCACTGTGGGCCTCTTGGGCAATGTGGTGGTGGTGATGATCCTCAT 47156821 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| | || ||||||||||||| |||| ||||||||||| || || Sbjct 47156822 AAAATACAGGAGGCTCCGAATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCGGA 47156881 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||||||| || || ||||| |||| Sbjct 47156882 CCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 47156919 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| || |||| || ||||||| |||| ||||| | Sbjct 47107441 GTACTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCTGGTCCTTGT 47107382 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||| | | |||||||| ||||| ||| | ||||||||| || ||| Sbjct 47107381 GCAATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACCTGGCCATTTCTGA 47107322 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 47107321 CCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATTGACT 47107284 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| ||||| |||| ||| Sbjct 47264141 TACTCACTGGTGTTCATCTTTGGTTTTGTGGGCAACATGCTGGTCATCCTCATCCTGATA 47264200 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| ||||| | || |||||| |||||| |||| ||||||||||| | |||| Sbjct 47264201 AACTGCAAAAGGCTGAAGAGCATGACTGACATCTACCTGCTCAACCTGGCCATCTCTGAC 47264260 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | || | || ||||||| ||| ||||| Sbjct 47264261 CTGTTTTTCCTTCTTACTGTCCCCTTCTGGGCTCACT 47264297 >seq848 Length=78004504 Score = 154 bits (170), Expect = 2e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 14422029 CTTCAGGCCCGTGATGTGTGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAA 14422088 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| | || Sbjct 14422089 AGGCACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 14422148 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||||| || ||||||||||| Sbjct 14422149 CACCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 14422193 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 14428847 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGTG 14428906 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | ||| || | || || | ||| |||||||| ||||||| Sbjct 14428907 GAGAATCCCAGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTCACTCCC 14428966 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || ||||| |||| | ||||| ||| ||| || Sbjct 14428967 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCCTGGAAGA 14429006 >seq1 Length=228908639 Score = 145 bits (160), Expect = 9e-30 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 186547703 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 186547644 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| || || ||| ||||| |||| |||||| |||| Sbjct 186547643 TGCCCCAAGCTGAGAACCA------------AGACCCAGACATCAAGGCGCATGTGAACT 186547596 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | || ||||| || || |||||||| || ||||||| ||||| ||| Sbjct 186547595 CCCTCGGGGAGAATCTGAAGACCCTCAGGCTGAGGCTACGGCGCTGT 186547549 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 186545372 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 186545313 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 186545312 TAGAAGCCTACATGACAA 186545295 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||| |||||||||||| |||||||||| | |||| ||||||| ||||||||| Sbjct 186548057 CAAATGAAGGATCAGCTGGACAACTTGTTGTTAAAGGAGTCCTTGCTGGAGGACTTTAAG 186547998 Query 178233 G 178233 | Sbjct 186547997 G 186547997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583191070250400