Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq931 356 3e-93 seq39 129 8e-25 seq1 129 8e-25 seq377 116 5e-21 seq638 109 8e-19 seq860 87.8 2e-12 >seq931 Length=156331669 Score = 356 bits (394), Expect = 3e-93 Identities = 641/934 (69%), Gaps = 12/934 (1%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| |||||| ||| ||| | |||| ||| |||| | | | ||| |||| ||| Sbjct 44829964 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTCATCC 44830023 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | |||| || || ||||| ||| || ||| ||||| | Sbjct 44830024 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCT 44830078 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 || | || ||||| || | | | | || |||| || | ||| || | Sbjct 44830079 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44830138 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| ||||| || |||||| ||||| | |||||||| || ||||| | Sbjct 44830139 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44830198 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||||| || || || |||| ||| || | || || | | ||||| Sbjct 44830199 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44830258 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | | ||| ||| || ||| || | | ||||| ||||| ||||| || || | Sbjct 44830259 CTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44830318 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| ||||||||||| ||||| | ||| || ||||| ||||| |||||||| Sbjct 44830319 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44830378 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||||| |||||||||||||||||||||| Sbjct 44830379 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTA 44830438 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCT 39803 |||| || || || |||| || || || | | || || | ||||| | Sbjct 44830439 CTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44830498 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || |||||||| ||||||||||| ||| | || ||||| |||||| | | Sbjct 44830499 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAGAAATT 44830557 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| | || || || || | |||||||||||||| ||||| | Sbjct 44830558 CCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44830617 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || || ||||| | ||||| ||||| || || | Sbjct 44830618 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44830677 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||||| ||| ||||||||||||| ||||| |||||||| || ||||| || ||| Sbjct 44830678 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44830737 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||||| ||||||||| | || ||||| ||| | ||||| || || | Sbjct 44830738 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGTCCT 44830797 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || | || || || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 44830798 TGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCC 44830857 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | || | || || || || ||||| Sbjct 44830858 AGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891 Score = 203 bits (224), Expect = 4e-47 Identities = 390/568 (69%), Gaps = 14/568 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||| ||| |||| |||||||| || ||||| | ||| || ||||||||||| Sbjct 144506197 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAG 144506138 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || | || |||||||| ||||| |||||||| ||||||||||| Sbjct 144506137 GCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAA 144506078 Query 39736 GATGCCTTCTACTGCTGCAA-------ATGCAACAAG-TCTCTCTCCGTAACTTGTATCA 39787 | ||| ||| | |||| |||||||| | |||| | |||| | | | Sbjct 144506077 GGTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATGTCT-TTG 144506019 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 || ||||| | ||||| | || |||||||| |||| |||||| ||||| || Sbjct 144506018 TTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATG 144505960 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 ||| | |||||| | | |||| | |||||||| |||||| || || | ||| || Sbjct 144505959 GCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTA 144505902 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 | ||||| |||| |||||||| || || || || || || || || || | ||| Sbjct 144505901 TTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCT 144505842 Query 39968 GTAATTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 ||||| || || || ||||| |||| |||| | || ||||||| | ||| ||||||| Sbjct 144505841 GTAATCTGAACTTCTTGAAC-AAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACA 144505783 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 || || || || |||| | ||| ||||||||| ||| || || ||| | Sbjct 144505782 TGCTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTC 144505723 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||||| || || || || | || || || | || |||| || || ||||| | Sbjct 144505722 CCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTAC 144505663 Query 40147 CTTTTTGTACATGTTCCATATATCACGA 40174 || || ||||| ||||| |||||| || Sbjct 144505662 TTTCTTTTACATTTTCCAAATATCATGA 144505635 >seq39 Length=107640188 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || |||||||| |||||||| ||||| ||||| | Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718 Query 39759 CAACAA 39764 | |||| Sbjct 97368719 CTACAA 97368724 >seq1 Length=228908639 Score = 129 bits (142), Expect = 8e-25 Identities = 174/242 (72%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 39820 CTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATC 39879 |||||| |||||||| |||||| || | || |||||| | | |||| | ||| Sbjct 140322428 CTTCTTGACACAAGG---TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATC 140322484 Query 39880 TTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCAT 39939 ||| | || || || || | |||||||||||||| ||||| ||||||| || || || Sbjct 140322485 TTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAAT 140322544 Query 39940 CTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGC 39999 || || | || ||||| | ||||| ||||| || || ||| | ||||| ||| | Sbjct 140322545 TTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCAC 140322604 Query 40000 CAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAA 40059 ||| |||||||| ||||| |||||||| || ||||| || |||| ||| | ||||| Sbjct 140322605 CAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAA 140322664 Query 40060 AT 40061 || Sbjct 140322665 AT 140322666 >seq377 Length=146757320 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 103162977 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 103163036 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| | |||||||| || ||||| || Sbjct 103163037 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGCC 103163096 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 103163097 ACCACTCTTTCCCC 103163110 >seq638 Length=135235416 Score = 109 bits (120), Expect = 8e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || |||||||| || | Sbjct 3869306 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 3869247 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 3869246 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 3869187 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || |||||||||| Sbjct 3869186 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 3869139 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 3884843 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 3884784 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 3884783 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 3884724 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 3884723 TCCAGGTAAATAGC 3884710 >seq860 Length=57935654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 184/268 (69%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGAT 37395 ||| ||| ||| || || ||||| ||| ||| | ||| | ||| |||| | || | Sbjct 51798151 TTAATTCTTTCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGT--CATCCAAAGCT 51798094 Query 37396 TGTACTTCATTCAGATCAGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATC 37454 || ||||| | | || |||| || | || |||| | | || ||||| || |||| ||| Sbjct 51798093 TGAACTTCTTCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATC 51798034 Query 37455 GCCCGTATTT-ATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCC 37513 || | ||| | || ||| || ||| | | ||| | || | || |||| ||| | Sbjct 51798033 ACCTTTTTTTGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTC 51797974 Query 37514 CCCTATAATCTTCATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAAC 37570 | |||||||||||||| | || || |||||||||||| | |||| || ||| | Sbjct 51797973 CTCTATAATCTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGC 51797914 Query 37571 CCGATCTAGGAGCTATTCTTCCATAACA 37598 | || || ||||||| || ||||||||| Sbjct 51797913 CAGACCTTGGAGCTACTC-TCCATAACA 51797887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686559240698040