Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq931 268 7e-67
seq1 140 3e-28
seq39 113 4e-20
seq848 89.7 4e-13
seq377 89.7 4e-13
seq235 89.7 4e-13
>seq931
Length=156331669
Score = 268 bits (296), Expect = 7e-67
Identities = 619/924 (67%), Gaps = 24/924 (3%)
Strand=Plus/Minus
Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736
|||| | || ||| || | | |||||| | || || || | || ||||| || ||||
Sbjct 44830914 TGCTGAGAGGAAACCCTTGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGC 44830855
Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796
| ||||| || || || |||| || || ||||| | || || || || || | || |
Sbjct 44830854 AGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGG 44830795
Query 43797 ACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGG 43856
|| | || ||| | | || || | || | | |||||||||| ||| |||
Sbjct 44830794 ACATTCGGCACTGGGAACCCCTGAAGCCCGAGGAGAGATATTTTATATCCCATGTTCTGG 44830735
Query 43857 CGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAG 43916
|| ||||| || || || || ||||| |||||||||||||| || ||| |||
Sbjct 44830734 TTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAA 44830675
Query 43917 AAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| ||
Sbjct 44830674 TAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATA 44830616
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
||||| |||||||| ||||| || || || || |||||||||||| | || | | |
Sbjct 44830615 CATTCTGAAATGTATAGTCTCCTTATTGACACTTACATCAAAGATCTCAAAGAAAGGGAA 44830556
Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095
| || ||||| || | ||| | ||| | || | || ||||| |||||| |
Sbjct 44830555 TTTCTCTTCAATGCCATTG-AACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTG 44830497
Query 44096 AAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152
||||| | | | | | | | ||| |||| |||| || || || | ||
Sbjct 44830496 CGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAACATGTTGTAGCCTTCGCTGCAGTA 44830437
Query 44153 GAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212
|||||||| |||||||| || || ||||| | ||||| ||| | ||||||||||| |
Sbjct 44830436 GAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCG 44830377
Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272
|||||||| | |||||||| ||||| | || || | ||||| || ||||| || |||
Sbjct 44830376 ATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGAT 44830317
Query 44273 TTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACA 44332
|||||||||||| | | | | || | | || || || || ||| | | | |
Sbjct 44830316 TTTGCTTGCTTGATGTTCAAACACCTGGTACAC---AAACCATCGGAGGAGAAAGTGAGA 44830260
Query 44333 GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTA 44392
|| || || | | || || |||||||||||||||| | || || || |||||
Sbjct 44830259 GAAATAATTATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTG 44830200
Query 44393 AATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451
|| | || || ||||| || || | | ||||| ||||| ||||| | | ||||| |
Sbjct 44830199 AAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGACAG 44830141
Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGATT 44507
| | |||||||||||| | | || | || ||| | | ||| ||||| |
Sbjct 44830140 ACTTATGCTGGAACTGGGTT----TTAGCAAGGTTTTCGGAGTAGAGAGCCCATTTGACT 44830085
Query 44508 TTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAAT 44567
||| ||| |||||||| || ||| || ||||| ||||| | | || || || |
Sbjct 44830084 TTACGGAGAATATTTCACTGAAAG-----ACTAACTTCTTTGAGAGGAGAGTAGGCGAGT 44830030
Query 44568 ATCAGCGAATGGGCGTCATGATAA 44591
||||| | ||| | || || |||
Sbjct 44830029 ATCAGAGGATGAGAGTGGTGTTAA 44830006
Score = 138 bits (152), Expect = 9e-28
Identities = 382/574 (67%), Gaps = 20/574 (3%)
Strand=Plus/Plus
Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782
|||||| || ||| ||||||| || |||| | ||| || || |||| || | || ||
Sbjct 144505635 TCATGATATTTGGAAAATGTAAAAGAAAGTAGAGGTTTCTTTCTGGATGGCCCAGGAGGT 144505694
Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840
|| || | || ||| || |||| ||| || | || || | ||| | |||||
Sbjct 144505695 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGTAAAGATATTTT 144505752
Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900
||||| || |||| || || || || | || |||||| | ||||||| || ||
Sbjct 144505753 ATATCCCATATTCTGGCTTTCTTCGCAGCATGTGATGGGATAATAGATGAAAACTTCGTG 144505812
Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959
| |||| ||||||||||| |||| ||||| | || || ||||| || |||||
Sbjct 144505813 GAACAATTTGTTCAAGAAGTTCAGATTA-CAGAAACCTCCTGCTTCTATGGCTTCCAAAT 144505871
Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
||| |||||||| || |||| ||||| | | ||| || || || || | || |||||
Sbjct 144505872 TGCTATAGAAAACATATATTCTGAAATAAATAATCTCCTTATTGACAC--ATATTAAAGA 144505929
Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079
| | || | | | | || | ||| || ||||| | |||| | | || | ||
Sbjct 144505930 TAACAAAGAAAGGGAATTTCTCTTCAGTGCCATTGAAACGATGCCTGTG-TCAAGAAGAA 144505988
Query 44080 AGCAGACTGGGCCCTTAAATGGAT---AAATTCAAA-TGATT-CTTTTGGAGAACG---- 44130
|||| |||| | | ||||| || |||| ||| | |||||||||
Sbjct 144505989 GGCAGGTTGGGTCTTGTGTTGGATTGGGAA--CAAAGACATTACCCATGGAGAACGTGTT 144506046
Query 44131 ACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATT 44190
| || || ||||| | | |||| ||| |||||||| || || ||||| |||||
Sbjct 144506047 GCATGCAGCCTTTGCCCTGGCGGAAAGCACCTTCTTTTCTGGTTCTTTTGCACTGATATT 144506106
Query 44191 TTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCG 44250
||| | ||||||| ||| |||||||||| | || ||||| ||||| | || || |
Sbjct 144506107 CTGGCTCAAGAAACAAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAG 144506166
Query 44251 TGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|||||| || ||||| || | ||||||||| ||
Sbjct 144506167 TGATGAGGGTTTACACTGTTACTTTGCTTGCCTG 144506200
>seq1
Length=228908639
Score = 140 bits (154), Expect = 3e-28
Identities = 144/186 (77%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895
|||||||||| ||| |||| || ||||| || || || || ||||| |||||||| |
Sbjct 140322666 ATTTTATATCCCGTGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACT 140322607
Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954
|||| || ||| ||||||||||| ||||| |||||| || ||||| |||| ||
Sbjct 140322606 TGGTGGAGCGATTTAGCCAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGACTTC 140322548
Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014
||||||||||| ||||| | ||||| |||||||| ||||| || || || || |||||
Sbjct 140322547 CAAATTGCCATGGAAAACACACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATA 140322488
Query 44015 AAAGAT 44020
||||||
Sbjct 140322487 AAAGAT 140322482
>seq39
Length=107640188
Score = 113 bits (124), Expect = 4e-20
Identities = 92/109 (84%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971
||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| |||||
Sbjct 97371077 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 97371019
Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| |||||||| |||||||| || || || ||||| ||||||
Sbjct 97371018 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 97370970
Score = 102 bits (112), Expect = 6e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|| ||||| |||| || ||||| | |||||||||||||||||||| || || ||||||
Sbjct 97368734 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCG 97368675
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| ||||||| || | || ||||| ||||| |
Sbjct 97368674 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCTAATGAACTT 97368615
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 97368614 ATTAGCAGAGATGA 97368601
>seq848
Length=78004504
Score = 89.7 bits (98), Expect = 4e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| |||| || || ||| | || ||||| || || || |||| ||||
Sbjct 14422195 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 14422136
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || || |||| || ||||| || |||||||| || || || || || ||||| || |
Sbjct 14422135 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTCGGTGTGCCTTTCAACATCGCCA 14422076
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198
| || || |||||||| || ||||||||||||
Sbjct 14422075 GCTACGCCCTGCTCACATACATGATTGCACAC 14422044
>seq377
Length=146757320
Score = 89.7 bits (98), Expect = 4e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 103151221 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 103151162
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 103151161 AACGAGTTTCAGAGTATCAGCG 103151140
Score = 89.7 bits (98), Expect = 4e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 103176194 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 103176253
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 103176254 AACGAGTTTCAGAGTATCAGCG 103176275
Score = 82.4 bits (90), Expect = 6e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757
|||||||| | |||||||| || || | ||| || ||| ||||||| ||| | |||||||
Sbjct 103188678 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 103188619
Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782
| || || |||||||||||||| ||
Sbjct 103188618 CTTCCTTCTGGACAGCAGAAGAGGT 103188594
>seq235
Length=173266796
Score = 89.7 bits (98), Expect = 4e-13
Identities = 250/380 (66%), Gaps = 9/380 (2%)
Strand=Plus/Minus
Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275
||| | || || ||||||| || | |||| || ||| ||||| | || || |||
Sbjct 29708148 GTGCTCCAGTTCCTAGGACTCTACAAGAAATTTGGAAAACCTGTATTTTTGGGTTTGGAC 29708089
Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAA---TACA-ATTGCATGAAAGAGCA 47331
|| ||||| ||||| | | || |||||||||||| ||| |||| | || ||
Sbjct 29708088 AACGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGTCAA----CA 29708033
Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391
| || ||| ||||||| || || ||| | |||| ||||||||| || || |||| ||
Sbjct 29708032 TGTTCCAACACTACATCCTACATCAGAAAAGCTAATAATTGCTGGAATGACTTTTACAAC 29707973
Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451
||||| | || ||||||| ||||| || | || |||||||| | | | |
Sbjct 29707972 TCTTGATCTTGGTGGACACAAGCAAGCATGTCAGGTTTGAAAAAATTATCTCCCAGCAAT 29707913
Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAAT 47511
| ||| || |||| | | || || | ||||||| || | || | || | ||| |
Sbjct 29707912 TAATGAGATTGTTTTTCTGGTGGATTCTGCAGATCATTCTGGCCTCATGGAATCTAAAGT 29707853
Query 47512 CGAATTCGATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGG 47571
|| | |||| || | | |||||| | || | |||| || || | | |||||
Sbjct 29707852 TGAGCTTAATGCTTTAATGACTGATGAAATAATATCCAATGTGCCAATCCTTATATTGGG 29707793
Query 47572 CAATAAAATCGACA-AACAA 47590
|| ||||| |||| |||||
Sbjct 29707792 TAACAAAATAGACAGAACAA 29707773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397258796119555
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