Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq931 268 7e-67 seq1 140 3e-28 seq39 113 4e-20 seq848 89.7 4e-13 seq377 89.7 4e-13 seq235 89.7 4e-13 >seq931 Length=156331669 Score = 268 bits (296), Expect = 7e-67 Identities = 619/924 (67%), Gaps = 24/924 (3%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | || ||| || | | |||||| | || || || | || ||||| || |||| Sbjct 44830914 TGCTGAGAGGAAACCCTTGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGC 44830855 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || |||| || || ||||| | || || || || || | || | Sbjct 44830854 AGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGG 44830795 Query 43797 ACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGG 43856 || | || ||| | | || || | || | | |||||||||| ||| ||| Sbjct 44830794 ACATTCGGCACTGGGAACCCCTGAAGCCCGAGGAGAGATATTTTATATCCCATGTTCTGG 44830735 Query 43857 CGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAG 43916 || ||||| || || || || ||||| |||||||||||||| || ||| ||| Sbjct 44830734 TTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAA 44830675 Query 43917 AAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 |||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| || Sbjct 44830674 TAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATA 44830616 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 ||||| |||||||| ||||| || || || || |||||||||||| | || | | | Sbjct 44830615 CATTCTGAAATGTATAGTCTCCTTATTGACACTTACATCAAAGATCTCAAAGAAAGGGAA 44830556 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095 | || ||||| || | ||| | ||| | || | || ||||| |||||| | Sbjct 44830555 TTTCTCTTCAATGCCATTG-AACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTG 44830497 Query 44096 AAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 ||||| | | | | | | | ||| |||| |||| || || || | || Sbjct 44830496 CGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAACATGTTGTAGCCTTCGCTGCAGTA 44830437 Query 44153 GAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212 |||||||| |||||||| || || ||||| | ||||| ||| | ||||||||||| | Sbjct 44830436 GAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCG 44830377 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 |||||||| | |||||||| ||||| | || || | ||||| || ||||| || ||| Sbjct 44830376 ATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGAT 44830317 Query 44273 TTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACA 44332 |||||||||||| | | | | || | | || || || || ||| | | | | Sbjct 44830316 TTTGCTTGCTTGATGTTCAAACACCTGGTACAC---AAACCATCGGAGGAGAAAGTGAGA 44830260 Query 44333 GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTA 44392 || || || | | || || |||||||||||||||| | || || || ||||| Sbjct 44830259 GAAATAATTATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTG 44830200 Query 44393 AATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451 || | || || ||||| || || | | ||||| ||||| ||||| | | ||||| | Sbjct 44830199 AAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGACAG 44830141 Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGATT 44507 | | |||||||||||| | | || | || ||| | | ||| ||||| | Sbjct 44830140 ACTTATGCTGGAACTGGGTT----TTAGCAAGGTTTTCGGAGTAGAGAGCCCATTTGACT 44830085 Query 44508 TTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAAT 44567 ||| ||| |||||||| || ||| || ||||| ||||| | | || || || | Sbjct 44830084 TTACGGAGAATATTTCACTGAAAG-----ACTAACTTCTTTGAGAGGAGAGTAGGCGAGT 44830030 Query 44568 ATCAGCGAATGGGCGTCATGATAA 44591 ||||| | ||| | || || ||| Sbjct 44830029 ATCAGAGGATGAGAGTGGTGTTAA 44830006 Score = 138 bits (152), Expect = 9e-28 Identities = 382/574 (67%), Gaps = 20/574 (3%) Strand=Plus/Plus Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 |||||| || ||| ||||||| || |||| | ||| || || |||| || | || || Sbjct 144505635 TCATGATATTTGGAAAATGTAAAAGAAAGTAGAGGTTTCTTTCTGGATGGCCCAGGAGGT 144505694 Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840 || || | || ||| || |||| ||| || | || || | ||| | ||||| Sbjct 144505695 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGTAAAGATATTTT 144505752 Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900 ||||| || |||| || || || || | || |||||| | ||||||| || || Sbjct 144505753 ATATCCCATATTCTGGCTTTCTTCGCAGCATGTGATGGGATAATAGATGAAAACTTCGTG 144505812 Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959 | |||| ||||||||||| |||| ||||| | || || ||||| || ||||| Sbjct 144505813 GAACAATTTGTTCAAGAAGTTCAGATTA-CAGAAACCTCCTGCTTCTATGGCTTCCAAAT 144505871 Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| |||||||| || |||| ||||| | | ||| || || || || | || ||||| Sbjct 144505872 TGCTATAGAAAACATATATTCTGAAATAAATAATCTCCTTATTGACAC--ATATTAAAGA 144505929 Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079 | | || | | | | || | ||| || ||||| | |||| | | || | || Sbjct 144505930 TAACAAAGAAAGGGAATTTCTCTTCAGTGCCATTGAAACGATGCCTGTG-TCAAGAAGAA 144505988 Query 44080 AGCAGACTGGGCCCTTAAATGGAT---AAATTCAAA-TGATT-CTTTTGGAGAACG---- 44130 |||| |||| | | ||||| || |||| ||| | ||||||||| Sbjct 144505989 GGCAGGTTGGGTCTTGTGTTGGATTGGGAA--CAAAGACATTACCCATGGAGAACGTGTT 144506046 Query 44131 ACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATT 44190 | || || ||||| | | |||| ||| |||||||| || || ||||| ||||| Sbjct 144506047 GCATGCAGCCTTTGCCCTGGCGGAAAGCACCTTCTTTTCTGGTTCTTTTGCACTGATATT 144506106 Query 44191 TTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCG 44250 ||| | ||||||| ||| |||||||||| | || ||||| ||||| | || || | Sbjct 144506107 CTGGCTCAAGAAACAAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAG 144506166 Query 44251 TGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||| || ||||| || | ||||||||| || Sbjct 144506167 TGATGAGGGTTTACACTGTTACTTTGCTTGCCTG 144506200 >seq1 Length=228908639 Score = 140 bits (154), Expect = 3e-28 Identities = 144/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895 |||||||||| ||| |||| || ||||| || || || || ||||| |||||||| | Sbjct 140322666 ATTTTATATCCCGTGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACT 140322607 Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| || ||| ||||||||||| ||||| |||||| || ||||| |||| || Sbjct 140322606 TGGTGGAGCGATTTAGCCAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGACTTC 140322548 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||||||||| ||||| | ||||| |||||||| ||||| || || || || ||||| Sbjct 140322547 CAAATTGCCATGGAAAACACACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATA 140322488 Query 44015 AAAGAT 44020 |||||| Sbjct 140322487 AAAGAT 140322482 >seq39 Length=107640188 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 97371077 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 97371019 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 97371018 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 97370970 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||| | |||||||||||||||||||| || || |||||| Sbjct 97368734 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCG 97368675 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| ||||||| || | || ||||| ||||| | Sbjct 97368674 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCTAATGAACTT 97368615 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 97368614 ATTAGCAGAGATGA 97368601 >seq848 Length=78004504 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 14422195 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 14422136 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| || || || || || ||||| || | Sbjct 14422135 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTCGGTGTGCCTTTCAACATCGCCA 14422076 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || |||||||| || |||||||||||| Sbjct 14422075 GCTACGCCCTGCTCACATACATGATTGCACAC 14422044 >seq377 Length=146757320 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 103151221 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 103151162 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 103151161 AACGAGTTTCAGAGTATCAGCG 103151140 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 103176194 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 103176253 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 103176254 AACGAGTTTCAGAGTATCAGCG 103176275 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 103188678 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 103188619 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 103188618 CTTCCTTCTGGACAGCAGAAGAGGT 103188594 >seq235 Length=173266796 Score = 89.7 bits (98), Expect = 4e-13 Identities = 250/380 (66%), Gaps = 9/380 (2%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | || || ||||||| || | |||| || ||| ||||| | || || ||| Sbjct 29708148 GTGCTCCAGTTCCTAGGACTCTACAAGAAATTTGGAAAACCTGTATTTTTGGGTTTGGAC 29708089 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAA---TACA-ATTGCATGAAAGAGCA 47331 || ||||| ||||| | | || |||||||||||| ||| |||| | || || Sbjct 29708088 AACGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGTCAA----CA 29708033 Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391 | || ||| ||||||| || || ||| | |||| ||||||||| || || |||| || Sbjct 29708032 TGTTCCAACACTACATCCTACATCAGAAAAGCTAATAATTGCTGGAATGACTTTTACAAC 29707973 Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451 ||||| | || ||||||| ||||| || | || |||||||| | | | | Sbjct 29707972 TCTTGATCTTGGTGGACACAAGCAAGCATGTCAGGTTTGAAAAAATTATCTCCCAGCAAT 29707913 Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAAT 47511 | ||| || |||| | | || || | ||||||| || | || | || | ||| | Sbjct 29707912 TAATGAGATTGTTTTTCTGGTGGATTCTGCAGATCATTCTGGCCTCATGGAATCTAAAGT 29707853 Query 47512 CGAATTCGATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGG 47571 || | |||| || | | |||||| | || | |||| || || | | ||||| Sbjct 29707852 TGAGCTTAATGCTTTAATGACTGATGAAATAATATCCAATGTGCCAATCCTTATATTGGG 29707793 Query 47572 CAATAAAATCGACA-AACAA 47590 || ||||| |||| ||||| Sbjct 29707792 TAACAAAATAGACAGAACAA 29707773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397258796119555