Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq219 118 9e-22 seq389 100 2e-16 seq646 95.1 1e-14 seq168 86.0 5e-12 >seq219 Length=165317712 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || |||||||| || Sbjct 57062850 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 57062791 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| ||||||||||| || | |||||| Sbjct 57062790 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCACGATCAG 57062731 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 57062730 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAAC 57062671 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 57062670 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 57062621 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || ||||| || ||||| || Sbjct 62366577 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 62366518 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| ||||||||||| || ||||| || Sbjct 62366517 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCCGACCAG 62366458 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 62366457 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 62366398 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||||||| | || |||| |||| || |||||||| Sbjct 62366397 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 62366350 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || |||||||| || Sbjct 62366805 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 62366746 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||||||||| || ||||| || Sbjct 62366745 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 62366686 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 62366685 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 62366626 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 62366625 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 62366576 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||||||| | || || ||||| ||||| || Sbjct 62367033 ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 62366974 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || |||||||| || ||||| || Sbjct 62366973 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 62366914 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 62366913 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 62366854 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 62366853 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 62366804 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC--GT 27045 |||||||| || || ||||| || || |||||| || || ||||||||||| || || Sbjct 57063078 ATGCAGATCTTCGTGAAAACCCTTACTGGCAAGATCATCACCCTTGAAGTGGAGCCCAGT 57063019 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| || || | ||||| ||||| ||||| |||||||||| || | || | Sbjct 57063018 GCCACT--ATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCAATCCCCGTGACC 57062961 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | | || | || ||||| || |||||| | | |||| || |||| Sbjct 57062960 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCGGGAAGATGGCCGCAGTCTTTCTGACTACA 57062901 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || |||| |||| | ||| |||| ||||| || | ||||| || Sbjct 57062900 ACATCCAGAAAGAGTAGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGGTAT 57062849 >seq389 Length=121655618 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| || || || Sbjct 27659450 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 27659391 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| |||||||||||||| || || ||||| || || || Sbjct 27659390 GACACCATTGAGAATGTCAATGCGAAAATTCAAGACAAGGAGGGTATACCCCCTGACCAG 27659331 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||||| | |||| ||| ||||||| |||| || Sbjct 27659330 CAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGA 27659296 >seq646 Length=133456746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || |||||||| || ||| | || || || || || || || Sbjct 124983164 ATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGT 124983105 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||| || ||||| || |||||||| || || || || Sbjct 124983104 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAG 124983045 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| ||||||| | ||| | || ||||||||| Sbjct 124983044 CAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGATTACAAC 124982985 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || |||| | ||| | | ||||| || Sbjct 124982984 ATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGAT 124982935 >seq168 Length=201391403 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || ||||| || Sbjct 5653674 ATGCAGATTTTCGTGAAAACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAACCCTCG 5653733 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || || || || || || ||||| || || || ||||| Sbjct 5653734 GATACGATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGGAATTCCTCCTGATCAG 5653793 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || | || || ||||| Sbjct 5653794 CAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAAT 5653853 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || ||| | | || ||||| Sbjct 5653854 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 5653900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434697075462720