Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq168 196 4e-45
seq39 152 4e-32
seq848 118 9e-22
seq235 95.1 1e-14
>seq168
Length=201391403
Score = 196 bits (216), Expect = 4e-45
Identities = 373/547 (68%), Gaps = 17/547 (3%)
Strand=Plus/Minus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| || | ||||| || |||| |||||||| || || || || | |||||
Sbjct 95260303 CTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATCGGCAAGAACGGGGACCTGCCC 95260244
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256
|||| || || | |||||||| | |||| || | |||||| | |||||||
Sbjct 95260243 AGGCCGCCACTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACTTCTTCAGTA 95260184
Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316
|| ||||||||| | || |||||||| || ||||| ||||| || |||| | | |
Sbjct 95260183 GAGGGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 95260126
Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374
|| | | ||||| || | ||||| ||| | |||||||| ||| | || || || || |
Sbjct 95260125 AGAATCGACCTTTAAAGGATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 95260066
Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434
||| || ||||| ||| |||| | |||| | ||| | || | || ||| |||||
Sbjct 95260065 CACAAGGAGCTCATTTTCTTGCCAGAAGTTTGGATGATGCCTTAAAACTTACTGAAGGAC 95260006
Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494
|||||||| | | | || || | |||||||||| ||||||| || ||||| ||| |||
Sbjct 95260005 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 95259946
Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554
| ||| | ||| || | || ||| | |||||||| |||| | ||||
Sbjct 95259945 AAGCCATGA----ATC------ACTTAAACTATTTGTGACAAGGATCATGCAGGACTTTG 95259896
Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614
| |||| || | || |||||||| | | ||||| |||| || |||||| |
Sbjct 95259895 CAAGTGACACGTTTTTTTCAGAAATTGACTTGGAGAAATATAAACTTCTGCCTGAATACC 95259836
Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674
||||||||| ||||| || || || | || || | ||||||||||| |||||
Sbjct 95259835 CAGGTGTTCTCTCTGATGTCCAGGAGGGGAAACACATCAAGTACAAATTTGAAGCATATG 95259776
Query 2675 aaaaaaa 2681
| || ||
Sbjct 95259775 AGAAGAA 95259769
Score = 172 bits (190), Expect = 5e-38
Identities = 183/240 (76%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329
||| ||| || |||| ||||||| |||||||| ||| ||||| |||||||||||
Sbjct 113845420 AAATGCC-CAGGAAGCCCTCATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAA 113845478
Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389
|||||| ||| || || | |||| ||||| || | ||||| || || || || || |
Sbjct 113845479 ACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGACAAGA 113845538
Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449
| ||||| || |||| ||||| |||||| |||| || ||||||||||| | || |||
Sbjct 113845539 TAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGG 113845598
Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509
| ||||||||||| |||| |||| | || || || ||||| | ||||||||| |||||||
Sbjct 113845599 AGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCAGGAA 113845658
>seq39
Length=107640188
Score = 152 bits (168), Expect = 4e-32
Identities = 360/535 (67%), Gaps = 18/535 (3%)
Strand=Plus/Minus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| || |||| || | || |||||||| || || || || | |||||
Sbjct 23977531 CTAAACTGCATCATCACTGTGTCCCAGAAGATGGGCATCGGCAAGAACGGGGACCTGCCC 23977472
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259
||||| || || | |||||||| | |||| || | | |||| | | ||| | |
Sbjct 23977471 TGGCCGCCACTCAGGAATGAATTCAGGTATTTCCAGAGAGTGACCACAACCTCCTCAGTA 23977412
Query 2260 TTA---AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316
| ||||||||| | || ||||||| || |||| ||||| || |||| ||
Sbjct 23977411 GAAGGTAAACAGAATTTGGTGATTATGGCTAGGAAGATCTGGTTCTCCATTCCTGAGAAG 23977352
Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376
| | ||||| || || ||||| ||| | |||||||| ||| ||| || || || |||
Sbjct 23977351 ATTCGACCTTTAAAGAATAGAATTAATTTAGTTCTCAGGAGAGACCACAA-GAACCTCCA 23977293
Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436
| || | ||| ||| |||||| |||| | || | || || ||| | ||||| ||||
Sbjct 23977292 CAAGGAGATCAATTTCTTGCAAGAAGTCTGGAGGATGC-CTTAAAACT-TAATA--ACCA 23977237
Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCT-ATGAGGA 2495
|||||| | | | || || | |||||||||| ||||||| || ||| | | || ||||
Sbjct 23977236 GAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGTAGTTCTATTTTATAAGGA 23977177
Query 2496 GAGCATTACAAGATCTTGCAAACAG----ATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551
||||| ||| ||| ||| | || ||| | |||| ||| | || | |
Sbjct 23977176 ATCCATTA----ATCACTCAAGCAGTCTTAAACTATTTGTCACAAAGATCATACAGGACT 23977121
Query 2552 TTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611
||||| |||| || | |||| ||||||| || | ||||| ||| || | ||||
Sbjct 23977120 TTGAAAGTGACACTTTTTTCC-AGAAATTGATTTGGAGAAATATAAATTTCTGCCAGAAT 23977062
Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGA 2666
||||||||| || || || || || || || || |||| |||||||||||
Sbjct 23977061 ACCCAGGTGTTTTCTTTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGA 23977007
>seq848
Length=78004504
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | || ||||| ||||||||| | ||||| || |||||||||
Sbjct 60825151 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 60825092
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 60825091 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTGGTGGACAAC 60825032
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 60825031 ATCGCCCTGTGGATGACTGA 60825012
Score = 111 bits (122), Expect = 1e-19
Identities = 121/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| || || | ||| |||||||||||||| | || ||||||||| | || |||||
Sbjct 14422033 AGGCCCGTGATGTGTGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 14422092
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| |
Sbjct 14422093 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 14422152
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||| ||||| | | | || ||||||||||| ||||
Sbjct 14422153 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 14422193
>seq235
Length=173266796
Score = 95.1 bits (104), Expect = 1e-14
Identities = 174/251 (69%), Gaps = 3/251 (1%)
Strand=Plus/Minus
Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492
|||||||||| | | | || || | |||||||||| ||| ||| || ||||| ||| |
Sbjct 57219382 ACCAGAATTAGCAAATAAAGTAGAGATGATTTGGATACTTGATGGCAGTTCTGTTTATAA 57219323
Query 2493 GGAGAGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551
||| ||| | | | || || | | | || ||| | |||||||| |||| | |
Sbjct 57219322 GGA-AGCCGTGAATCACTCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACT 57219264
Query 2552 TT-GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAA 2610
|| ||| |||| || | || ||||||||| | || ||||| |||| || | |||
Sbjct 57219263 TTTGAAAGTGACACGTGTTTTCCAGAAATTGACTTTGAGAAATATAAACTTCTGCCAGAA 57219204
Query 2611 TTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATA 2670
| || ||||||| ||||| || || || || || || |||| ||||||||||| ||
Sbjct 57219203 TACCCTGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTA 57219144
Query 2671 TATGaaaaaaa 2681
||| | || ||
Sbjct 57219143 TATAAGAAGAA 57219133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414271150989004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |