Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq168 196 4e-45 seq39 152 4e-32 seq848 118 9e-22 seq235 95.1 1e-14 >seq168 Length=201391403 Score = 196 bits (216), Expect = 4e-45 Identities = 373/547 (68%), Gaps = 17/547 (3%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || |||| |||||||| || || || || | ||||| Sbjct 95260303 CTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATCGGCAAGAACGGGGACCTGCCC 95260244 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 |||| || || | |||||||| | |||| || | |||||| | ||||||| Sbjct 95260243 AGGCCGCCACTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACTTCTTCAGTA 95260184 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 95260183 GAGGGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 95260126 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| ||| | || || || || | Sbjct 95260125 AGAATCGACCTTTAAAGGATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 95260066 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | || ||| ||||| Sbjct 95260065 CACAAGGAGCTCATTTTCTTGCCAGAAGTTTGGATGATGCCTTAAAACTTACTGAAGGAC 95260006 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||| Sbjct 95260005 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 95259946 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | ||| || | || ||| | |||||||| |||| | |||| Sbjct 95259945 AAGCCATGA----ATC------ACTTAAACTATTTGTGACAAGGATCATGCAGGACTTTG 95259896 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 | |||| || | || |||||||| | | ||||| |||| || |||||| | Sbjct 95259895 CAAGTGACACGTTTTTTTCAGAAATTGACTTGGAGAAATATAAACTTCTGCCTGAATACC 95259836 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 ||||||||| ||||| || || || | || || | ||||||||||| ||||| Sbjct 95259835 CAGGTGTTCTCTCTGATGTCCAGGAGGGGAAACACATCAAGTACAAATTTGAAGCATATG 95259776 Query 2675 aaaaaaa 2681 | || || Sbjct 95259775 AGAAGAA 95259769 Score = 172 bits (190), Expect = 5e-38 Identities = 183/240 (76%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 ||| ||| || |||| ||||||| |||||||| ||| ||||| ||||||||||| Sbjct 113845420 AAATGCC-CAGGAAGCCCTCATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAA 113845478 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||| || || | |||| ||||| || | ||||| || || || || || | Sbjct 113845479 ACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGACAAGA 113845538 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| || |||| ||||| |||||| |||| || ||||||||||| | || ||| Sbjct 113845539 TAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGG 113845598 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||||||||| |||| |||| | || || || ||||| | ||||||||| ||||||| Sbjct 113845599 AGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCAGGAA 113845658 >seq39 Length=107640188 Score = 152 bits (168), Expect = 4e-32 Identities = 360/535 (67%), Gaps = 18/535 (3%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || |||| || | || |||||||| || || || || | ||||| Sbjct 23977531 CTAAACTGCATCATCACTGTGTCCCAGAAGATGGGCATCGGCAAGAACGGGGACCTGCCC 23977472 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259 ||||| || || | |||||||| | |||| || | | |||| | | ||| | | Sbjct 23977471 TGGCCGCCACTCAGGAATGAATTCAGGTATTTCCAGAGAGTGACCACAACCTCCTCAGTA 23977412 Query 2260 TTA---AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 | ||||||||| | || ||||||| || |||| ||||| || |||| || Sbjct 23977411 GAAGGTAAACAGAATTTGGTGATTATGGCTAGGAAGATCTGGTTCTCCATTCCTGAGAAG 23977352 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || || ||||| ||| | |||||||| ||| ||| || || || ||| Sbjct 23977351 ATTCGACCTTTAAAGAATAGAATTAATTTAGTTCTCAGGAGAGACCACAA-GAACCTCCA 23977293 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 | || | ||| ||| |||||| |||| | || | || || ||| | ||||| |||| Sbjct 23977292 CAAGGAGATCAATTTCTTGCAAGAAGTCTGGAGGATGC-CTTAAAACT-TAATA--ACCA 23977237 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCT-ATGAGGA 2495 |||||| | | | || || | |||||||||| ||||||| || ||| | | || |||| Sbjct 23977236 GAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGTAGTTCTATTTTATAAGGA 23977177 Query 2496 GAGCATTACAAGATCTTGCAAACAG----ATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551 ||||| ||| ||| ||| | || ||| | |||| ||| | || | | Sbjct 23977176 ATCCATTA----ATCACTCAAGCAGTCTTAAACTATTTGTCACAAAGATCATACAGGACT 23977121 Query 2552 TTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611 ||||| |||| || | |||| ||||||| || | ||||| ||| || | |||| Sbjct 23977120 TTGAAAGTGACACTTTTTTCC-AGAAATTGATTTGGAGAAATATAAATTTCTGCCAGAAT 23977062 Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGA 2666 ||||||||| || || || || || || || || |||| ||||||||||| Sbjct 23977061 ACCCAGGTGTTTTCTTTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGA 23977007 >seq848 Length=78004504 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 60825151 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 60825092 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 60825091 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTGGTGGACAAC 60825032 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 60825031 ATCGCCCTGTGGATGACTGA 60825012 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| |||||||||||||| | || ||||||||| | || ||||| Sbjct 14422033 AGGCCCGTGATGTGTGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 14422092 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| | Sbjct 14422093 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 14422152 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 14422153 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 14422193 >seq235 Length=173266796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 174/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492 |||||||||| | | | || || | |||||||||| ||| ||| || ||||| ||| | Sbjct 57219382 ACCAGAATTAGCAAATAAAGTAGAGATGATTTGGATACTTGATGGCAGTTCTGTTTATAA 57219323 Query 2493 GGAGAGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551 ||| ||| | | | || || | | | || ||| | |||||||| |||| | | Sbjct 57219322 GGA-AGCCGTGAATCACTCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACT 57219264 Query 2552 TT-GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAA 2610 || ||| |||| || | || ||||||||| | || ||||| |||| || | ||| Sbjct 57219263 TTTGAAAGTGACACGTGTTTTCCAGAAATTGACTTTGAGAAATATAAACTTCTGCCAGAA 57219204 Query 2611 TTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATA 2670 | || ||||||| ||||| || || || || || || |||| ||||||||||| || Sbjct 57219203 TACCCTGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTA 57219144 Query 2671 TATGaaaaaaa 2681 ||| | || || Sbjct 57219143 TATAAGAAGAA 57219133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414271150989004