Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq389 91.5 1e-13 seq377 89.7 4e-13 seq646 87.8 2e-12 seq168 82.4 7e-11 >seq389 Length=121655618 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| || | | | ||||| || | ||| || ||| || || || || || | Sbjct 27659223 GCCACCTCGTAGGTGCAGCACCAGGTGCGGGGTGGGCTGTTTCTGGATGTTGTAGTCTGA 27659282 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || | || | || || |||||||||| |||||||| |||||||||||||| | ||| Sbjct 27659283 GAGAATGCGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGGGG 27659342 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||| ||||| |||||| |||| || | | || || || | ||| || Sbjct 27659343 TATACCCTCCTTGTCTTGAATTTTCGCATTGACATTCTCAATGGTGTCACTGGGCTCGAC 27659402 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| | || ||||| || || || |||||||| ||||||| Sbjct 27659403 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 27659452 >seq377 Length=146757320 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/145 (75%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 124616689 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 124616630 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || |||||||||||||||| ||| |||||||||||||| ||||| Sbjct 124616629 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 124616570 Query 39176 GCACGCTCTCTTTGTCCATGATTTT 39200 | | || ||| |||||| ||| ||| Sbjct 124616569 G-ATGCCCTCCTTGTCC-TGAATTT 124616547 >seq646 Length=133456746 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 39049 TTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTA 39108 ||| | | ||| |||| | ||| | ||||| || || || |||||| || || || Sbjct 115608216 TTAATAATGCCACCTCGCAGGCGCAGCACCAGGTGCAGGATGGACTCTTTCTGGATGTTC 115608275 Query 39109 TAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGG 39168 || || | || | | | || || |||||||||||| ||||||| |||| ||||||| Sbjct 115608276 TAGTCTGAGAGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGG 115608335 Query 39169 TCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTC 39228 || | | | || ||| ||||| |||||| ||||| || | | || || || Sbjct 115608336 TCAGGCAGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTG 115608395 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | | |||| || | ||||| | || ||||| || || || | |||||| ||||||| Sbjct 115608396 GGCCCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCATCT 115608453 >seq168 Length=201391403 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/219 (69%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || |||||| |||||| | || || || || | || ||| | | Sbjct 28010475 GCGCAGCACCAGGTGCAGCGTGGACTCTTTCCGGATGTTGTAGTCTGAGAGAGTTTGGCC 28010416 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 || || ||||||||||| |||| ||| ||| |||||||||| |||||| | | ||| | Sbjct 28010415 ATCCTCCAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGG-ATAC-CTCCT 28010358 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||| ||||| ||||| || | | || || || | || || || | |||| Sbjct 28010357 TGTGTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTTGGCTTGACCTCAAGAGTGA 28010298 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | | || ||||| || || || |||||||| ||||||| Sbjct 28010297 TGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 28010259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429332474373143