Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq848 145 6e-30 seq168 109 4e-19 >seq848 Length=78004504 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || ||| Sbjct 14422033 AGGCCCGTGATGTGTGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 14422092 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| |||||||| || || |||||||| |||||||| || ||||| | || | Sbjct 14422093 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 14422152 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 14422153 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 14422197 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 14428853 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGTGGAGAAT 14428912 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| || || ||||| |||||||| || || ||||| Sbjct 14428913 CCCAGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 14428972 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||| | |||||||| || Sbjct 14428973 GACAGCTCTTTAGCATTTGTGGATCC 14428998 >seq168 Length=201391403 Score = 109 bits (120), Expect = 4e-19 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || || | Sbjct 95260052 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 95260111 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 95260112 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 95260171 Query 114382 CTGCTTA-CCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 ||| ||| ||||| | ||||| || | |||| | ||| | || | | || || || Sbjct 95260172 CTGTTTACCCTCT-ACTGAAGAAGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 95260229 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACAC 114499 | ||| || ||| ||||| || ||||| || ||||||||||||| | | || Sbjct 95260230 CTGAGT------GGCGGCCTGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTTTGGGAC 95260283 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 95260284 ACAGCGACGATGCAGTTTAG 95260303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405961675908946